Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0392 ATGTCGAATCGATCTAGTCAGGGTAGACAACATGACAACAATAACAACAAGGGTTTCGCCAAAACCCATAATCAGAAGAAATTCGTCCCCAAAAACCAAAGTCAAAATCCCAATCCTAACCCAACTCCAACCCTCTCAACCTCCCTCAGACAAACACAACCAAACAGAGGGCAGAAGGGGAATTTCGTTAAATACTTGCCGCAAGACGAAGCTGTGGCAGCGGGTCTCGGCGCCGAAGATGGAGCATTGGATCCCCTCGAATCTCAGAGAGTCGTAGATCTTTTGAACACACAGCTATCTCGCTTGCTCAAGTTGAAACCCAAGCAATTCTGGACACAAGTGGCTACTGACACCTCCCTGCATGAGCTTTTGGACAGCTTCTTGCAGTTCAGGAGCAGGTGGTATGATTTCCCTCATCGCGGGGTGCAAGGGATTGTTGCCGGTGTTATTGTTGGGGAGCTCGAGTTGAGTCGCCGCGTTTTCATGGTATTGTATCGCATTTCTTCGAATAAAGACCCCGGTGCACGACCTGTGGATGCTCTCAGTTTGAGAGACCATGAAGTTCTTTTGCAGGAGAAGAAGTTGCTTGAATTGCCGAAGTTGTTGGATATATGTGCCATATACCATCATGAAAATGAAGAACTGACAAGATCACTGGTTAGAAATTCTTTGAATGCTCAGCCTTGGATCCATAATAATCTGACTGCAGTAATATCCCATTTTCTAGGAATTGTCAGCACAATGCATGAACGTTGTAGTTCATCATTGGAGGTCTTGTTTTCTTCTGGAAACTTCGATCACCATAATGCTGCTTTTCTTCAAGCTGATCTGCTGGAGGTAATGGACTTTATAAATGATGCAATTGTATCAATGGACTCTTTTGTTAGTGTATACGAACCAGCAGCTGTTTTCTTCTCTTGCCCAGTAGAAATGAGTTATGGGAATGAGGAACTGCTGAGCCTCCTTGCCAGATTGCATGATTCACTAATTCCATCATTGCAAAAGGGATTCCGTGTGATTTTTGCTGACAAACAAGATGATACAGTATCTAATGTCTTAGTAAGTTTGAAGATGTTAAAAATTAGATTGGTGAAGTTTGGTTGGCAACTATTGCACTTGTGCTATCTAAGTGATGAAGTGTTCAGAGATAGCATCCCTCTTCCAGCTGCCACAAAGATGTTTCCTGCCAATGTAGAGGACCCAGTCATCAGAGCAGATATTCTGGTTCAAACATTTAGAGAGATCAATTCGATATCATTACATTCTCAGGAAAGCCATCTGAAGGAAACATTTCTTCAAGATGTTGAAAGAAATTTCAATATACTAAGCAGGATTGAGAGATTAAGGGATGGTGGATGGATATTCATTGATGATGAACAGTTTCAATATATATCTGGGATGTTGAGTTCTGTTTATAAGGAGCCGTATTCTGCCTCAACCCCTGCGCCAAACCAAACATTGCTGATGGATGAAGATGCTGCAATTTCAGAGTCAAACATCAGTCAGATTAGGGACCTGTTCCCTGATTATGGTAAAGGTTTTTTAGCTGCGTGTCTTGAGGTCTATGACCAGAATCCAGAAGAGGTTATTCAAAGAATTTTAGAGGGAACCCTTCATGAAGATCTGCAGAACATGGACACCTCACTAGAGACATTGCCACCAGCCAAGTCTACCACTGTGGGTGGGAATGATAAAGGAAAAGGTAAGTTAATTGATTCTACGCCAGCATCCTCAAATCCAGAAGTTGTTAGGGGGAAGCAACAGGCAGAGGGCCCAGTGATGTCATCCTCTGCTTCACTGGGAAAATTTGTGAGGAAATCTAGAGCTGACTTGCCTGATCGCAGTATTCTGGATAAAAAGGATGAAAAAGATACATCAAGAACTGCTGCTATGATTTTACAATATGAATATGAAGATGAGTATGATGACTCTTTTGATGACTTGGGTCTAAGTGTAGCAGATTCTGGAGTAGAAGAAAATGAGACACTGGGTGACCAAATAAACGCAAAGTCAGGGAATTCGTGGGCAACAGGGAGTGGAAACTCTGTCAAAAATGCCCCTGATTCAAAATGGGGCTCCAGGAAAAAGCCGCAGTACTATGTCAAGGATGGTAAGAACTACAGCTACAAAGTGGCTGGTGCAGTAGCAGTGGCAAATTCTGATGAAGCTTCGTTAATAACGCAAGCTCAGAAAGAATTGATACATGGCCTTGGACGTGGTGGCAACCTTCCTCTTGACGCGGTAAAGAAAGTGACTGATTCCTACAAGGAGGATGATAACCAATCCCAGGTTTCTGAAATGGAAGGGAGAGGGATTTCGGGCAATTCGTTTGGTAGGGGAAGGAAGGAAGGTGGAAAACAAGTTTCATCTCATCAGCAACAGGAGAAACAATCCGATGATTCCGAGGTGGATAGCAATTATCAAAGGGGGAGAGGGAGAGGAAGAGGGAGGGGAAGGGGAGGAGGAAGAAACAATCATTACCAGAAGGACCGAGCAATGAAGAAGCATTTCTCTGGAATGAGTGGTTATTAA 2532 0.4333 MSNRSSQGRQHDNNNNKGFAKTHNQKKFVPKNQSQNPNPNPTPTLSTSLRQTQPNRGQKGNFVKYLPQDEAVAAGLGAEDGALDPLESQRVVDLLNTQLSRLLKLKPKQFWTQVATDTSLHELLDSFLQFRSRWYDFPHRGVQGIVAGVIVGELELSRRVFMVLYRISSNKDPGARPVDALSLRDHEVLLQEKKLLELPKLLDICAIYHHENEELTRSLVRNSLNAQPWIHNNLTAVISHFLGIVSTMHERCSSSLEVLFSSGNFDHHNAAFLQADLLEVMDFINDAIVSMDSFVSVYEPAAVFFSCPVEMSYGNEELLSLLARLHDSLIPSLQKGFRVIFADKQDDTVSNVLVSLKMLKIRLVKFGWQLLHLCYLSDEVFRDSIPLPAATKMFPANVEDPVIRADILVQTFREINSISLHSQESHLKETFLQDVERNFNILSRIERLRDGGWIFIDDEQFQYISGMLSSVYKEPYSASTPAPNQTLLMDEDAAISESNISQIRDLFPDYGKGFLAACLEVYDQNPEEVIQRILEGTLHEDLQNMDTSLETLPPAKSTTVGGNDKGKGKLIDSTPASSNPEVVRGKQQAEGPVMSSSASLGKFVRKSRADLPDRSILDKKDEKDTSRTAAMILQYEYEDEYDDSFDDLGLSVADSGVEENETLGDQINAKSGNSWATGSGNSVKNAPDSKWGSRKKPQYYVKDGKNYSYKVAGAVAVANSDEASLITQAQKELIHGLGRGGNLPLDAVKKVTDSYKEDDNQSQVSEMEGRGISGNSFGRGRKEGGKQVSSHQQQEKQSDDSEVDSNYQRGRGRGRGRGRGGGRNNHYQKDRAMKKHFSGMSGY* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0392 843 Pfam CUE domain 497 537 IPR003892 GO:0043130
Gso4g0392 843 MobiDBLite consensus disorder prediction 667 693 - -
Gso4g0392 843 MobiDBLite consensus disorder prediction 667 688 - -
Gso4g0392 843 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 13 842 - -
Gso4g0392 843 ProSiteProfiles CUE domain profile. 495 538 IPR003892 GO:0043130
Gso4g0392 843 CDD CUE_ASCC2 497 536 IPR041800 -
Gso4g0392 843 SUPERFAMILY UBA-like 497 552 IPR009060 GO:0005515
Gso4g0392 843 MobiDBLite consensus disorder prediction 754 843 - -
Gso4g0392 843 Gene3D - 496 538 - -
Gso4g0392 843 MobiDBLite consensus disorder prediction 572 595 - -
Gso4g0392 843 MobiDBLite consensus disorder prediction 784 811 - -
Gso4g0392 843 MobiDBLite consensus disorder prediction 1 59 - -
Gso4g0392 843 MobiDBLite consensus disorder prediction 549 599 - -
Gso4g0392 843 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 13 842 - -
Gso4g0392 843 SMART cue_7 495 537 IPR003892 GO:0043130
Gso4g0392 843 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0392 Gso-Chr4 3573744 3581445 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0392 K18667 - gmx:100778129 1576.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0392 4 3573744 3581445 Gso4g0392 4 3573744 3581445 ECH
Gso4g0392 4 3573744 3581445 Gso6g0369 6 3461237 3468971 GST