Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0301 ATGCATAGAGTTATAGCAGAAACTTCTCTATTCCTCCTCCTCCTGTTTTCATTAGGTAACCTAGCTTCAGCCACAATGTTCACCATCGAAAACCGTTGCAGCTACACGGTCTGGCCCGGAACCATCGCCGGCAATGGCGCCGCCGTTCTCGGCGACGGCGGGTTTCCCCTACCGACGGGAACGTCCGTCCGACTCGCAGCTCCGGCGGGCTGGTCGGGGCGGTTCTGGGGCCGAACCGGCTGCAACTTCGACGACGCCGGAATCGGAAAATGCCTTACCGGAGACTGCGCCGGCGGGATGAAGTGCACCGGGGGAGGCGTGCCGCCGGTGACGCTGGCGGAGTTCACGATCGGAACCGGGTCCGCCCAGGACTTCTACGACGTGAGTTTGGTGGACGGTTACAACGTGGCGATGGGGGTGAGGGCAACCGGAGGAACCGGTAACTGCCAGTACGCGGGGTGCGTTACGGACTTGAACGGTAAGTGCCCCACCGAGTTGCAGGTTACGGCGGAGGGAGGGTCGATTGTGGCGTGCAAGAGCGCGTGCGCGGCGTTCAACGCGGCGGAGTTTTGCTGCACCGGTGAGTACTCGACGCCGCAGACTTGCAAGCCGACGCAATACTCGGAGATATTCAAGAGTGCATGTCCCTCGGCGTATAGTTACGCTTACGATGATGCTACCAGCACTTGCACGTGCTCTGCCTCCGATTACGTTATCACTTTTTGTCCTAACTAA 735 0.6 MHRVIAETSLFLLLLFSLGNLASATMFTIENRCSYTVWPGTIAGNGAAVLGDGGFPLPTGTSVRLAAPAGWSGRFWGRTGCNFDDAGIGKCLTGDCAGGMKCTGGGVPPVTLAEFTIGTGSAQDFYDVSLVDGYNVAMGVRATGGTGNCQYAGCVTDLNGKCPTELQVTAEGGSIVACKSACAAFNAAEFCCTGEYSTPQTCKPTQYSEIFKSACPSAYSYAYDDATSTCTCSASDYVITFCPN* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0301 244 PIRSF PR5 1 244 IPR001938 -
Gso4g0301 244 ProSiteProfiles Thaumatin family profile. 24 244 IPR001938 -
Gso4g0301 244 PANTHER PATHOGENESIS-RELATED PROTEIN 5 21 243 - -
Gso4g0301 244 PANTHER OS03G0233200 PROTEIN 21 243 IPR001938 -
Gso4g0301 244 Pfam Thaumatin family 31 243 IPR001938 -
Gso4g0301 244 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Gso4g0301 244 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Gso4g0301 244 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Gso4g0301 244 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Gso4g0301 244 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Gso4g0301 244 ProSitePatterns Thaumatin family signature. 87 102 IPR017949 -
Gso4g0301 244 Gene3D Thaumatin 25 243 IPR037176 -
Gso4g0301 244 SUPERFAMILY Osmotin, thaumatin-like protein 26 244 IPR037176 -
Gso4g0301 244 CDD TLP-PA 27 242 - -
Gso4g0301 244 SMART tha2 27 243 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0301 Gso-Chr4 2729925 2731020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0301 9 244 Receptor kinase-like Gene Family AT5G38280 46.748 1.61e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0301 - - gmx:100809378 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0301 4 2729925 2731020 Gso4g0301 4 2729925 2731020 ECH