Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0269 ATGGCTGTGATCCCGTGTCACTGTTACCGTACCGTCGGATCAGACAAACCCTACCTCTCCGGTCAGAGTCTCCGCCGTCGCGCTCCTTTCCCCGCCGTCTCTGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCTGCCATCGCTCACAAAGTTGGGCTGAAAGATTTTCTTCACTTAGATGATTTTGATAAGGACACTATTCTGAAGATGCTGGACCGGGCACTTGAGGTCAAGGCCTTGCTGAAGTCAGGGGACAGGTCGTTTCGACCTTTTGAGGGGAAGACAATGGCAATGATATTTACAAAGCCGTCCATGAGAACGCGTGTTTCGTTCGAGACTGGCTTTACATTGTTAGGTGGCCATGCTATTTATTTAGGACCTGATGATATCCAAATGGGCAAGCGAGAGGAGACTCGTGACATTGCTCGTGTTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTTTTTGCTCATAAGGACATACTTGATCTTGCAAAATATGCAACTGTGCCAGTCATCAATGGGTTGACAGACTACAACCATCCCTGCCAGATAATGGCTGATGCCCTTACCATGGTTGAGCACATTGGTCGGTTTGAAGGTACAAAGGTTGTCTATGTTGGAGATGGAAATAATATTGTTCACTCATGGTTGTTGATGGCATCTGTAATTCCGTTTCACTTTGTCTGTGCGTGTCCTAAAGGATTTGAACCTGATGCAAAAACAGTTGAGAAGGCAAGGAAAGCTGGAATCAGCAAGATTGAGATAACTAATGATCCCAAAGAGGCTGTTAAAGGAGCTGATGTTGTGTATTCAGATGTCTGGGCCAGCATGGGCCAAAAGGAAGAAGCTGAATACCGGCGCCAAGCTTTTAAAGGATTTCAGGTGAACCAAAATCTTATGGATTTGGCTGGTTCAAAGGCATTTTTCATGCATTGCTTACCGGCGGAAAGAGGGGTGGAGGTGACTGACGAAGTTATTGAAGCTCCAAATTCAATAGTCTTCCCGCAAGCTGAGAACCGAATGCATGCACAGAATGCCGTAATGCTTCATGTACTTGCCAAGTAG 1077 0.4615 MAVIPCHCYRTVGSDKPYLSGQSLRRRAPFPAVSVSFRRRISCVASSAIAHKVGLKDFLHLDDFDKDTILKMLDRALEVKALLKSGDRSFRPFEGKTMAMIFTKPSMRTRVSFETGFTLLGGHAIYLGPDDIQMGKREETRDIARVLSRYNDIIMARVFAHKDILDLAKYATVPVINGLTDYNHPCQIMADALTMVEHIGRFEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDAKTVEKARKAGISKIEITNDPKEAVKGADVVYSDVWASMGQKEEAEYRRQAFKGFQVNQNLMDLAGSKAFFMHCLPAERGVEVTDEVIEAPNSIVFPQAENRMHAQNAVMLHVLAK* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0269 358 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 56 197 IPR006132 GO:0006520|GO:0016743
Gso4g0269 358 PRINTS Ornithine carbamoyltransferase signature 100 114 IPR002292 GO:0016743
Gso4g0269 358 PRINTS Ornithine carbamoyltransferase signature 133 146 IPR002292 GO:0016743
Gso4g0269 358 PRINTS Ornithine carbamoyltransferase signature 173 187 IPR002292 GO:0016743
Gso4g0269 358 PRINTS Ornithine carbamoyltransferase signature 273 283 IPR002292 GO:0016743
Gso4g0269 358 PRINTS Ornithine carbamoyltransferase signature 335 346 IPR002292 GO:0016743
Gso4g0269 358 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, CHLOROPLASTIC-LIKE 28 356 - -
Gso4g0269 358 Hamap Ornithine carbamoyltransferase, catabolic [argI]. 55 357 IPR024904 GO:0004585|GO:0006591
Gso4g0269 358 Gene3D Aspartate/ornithine carbamoyltransferase 56 186 IPR036901 GO:0006520|GO:0016597|GO:0016743
Gso4g0269 358 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 55 356 IPR036901 GO:0006520|GO:0016597|GO:0016743
Gso4g0269 358 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 203 354 IPR006131 GO:0006520|GO:0016597|GO:0016743
Gso4g0269 358 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 28 356 - -
Gso4g0269 358 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 102 121 IPR006130 GO:0006520|GO:0016597|GO:0016743
Gso4g0269 358 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 184 195 IPR006130 GO:0006520|GO:0016597|GO:0016743
Gso4g0269 358 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 309 318 IPR006130 GO:0006520|GO:0016597|GO:0016743
Gso4g0269 358 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 321 344 IPR006130 GO:0006520|GO:0016597|GO:0016743
Gso4g0269 358 Gene3D Aspartate/ornithine carbamoyltransferase 187 352 IPR036901 GO:0006520|GO:0016597|GO:0016743
Gso4g0269 358 TIGRFAM orni_carb_tr: ornithine carbamoyltransferase 56 356 IPR002292 GO:0016743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0269 Gso-Chr4 2467959 2474389 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0269 K00611 - gmx:100775828 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0269 4 2467959 2474389 Gso4g0269 4 2467959 2474389 ECH
Gso4g0269 4 2467959 2474389 Gso6g0248 6 2397785 2402269 GST