Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0249 ATGACTCGTTTATATTCCCTTTCTCTTTTACAATTCCTGTCTCTGATTCTCCTTTTCACACTTTTCTTCTTGTCTGCCTCTGACACCTCCGAACTGTTCGAAAAGTGGTGTAAGGAACACAGCAAAACATACTCTTCCGAGGAAGAAAAACTGTACAGGCTCAAAGTGTTCGAGGACAACTATGCCTTTGTCGCCCAACACAACCAAAACGCCAATAATAACAATAATAATCCAAGCTACACTCTTTCCCTCAACGCTTTCGCCGATCTCACCCACCATGAATTCAAAACCACTCGTCTCGGTCTTCCCCCTACCTTGCTTCGATTCAAACGTCCCCAGAATCAACAATCCCGTGACCTTCTGCACATTCCTTCTCAGATCGATTGGAGACAGAGCGGCGCAGTTACACCCGTCAAAGACCAAGCAAGCTGTGGTGCATGTTGGGCGTTCTCAGCTACTGGTGCTATTGAAGGCATAAATAAGATTGTCACAGGGTCTCTTTTAAGCCTTTCTGAACAAGAGCTGATAGATTGTGATACATCCTACAACAGTGGTTGTGGAGGTGGACTCATGGATTTTGCATACCAATTTGTCATCGACAACAAAGGGATTGACACTGAGGAGGATTATCCGTATCAAGCTCGGCAACGGTCCTGCAGTAAGGACAAGTTAAAAAGGCGTGCTGTTACAATTGAGGATTATGTTGACGTGCCTCCGAGTGAGGAAGAGATACTAAAGGCCGTTGCATCACAACCTGTAAGCGTAGGCATATGTGGTAGTGAAAGAGAATTCCAGTTGTACTCAAAGGGTATCTTCACTGGGCCATGTTCAACTTTTTTGGATCACGCAGTATTGATAGTAGGATATGGTTCAGAAAATGGAGTTGATTATTGGATTGTAAAGAATTCATGGGGAAAATATTGGGGAATGAATGGCTACATACACATGATACGAAATAGTGGCAATTCCAAAGGAATATGCGGAATTAACACATTAGCTTCATATCCTGTCAAGACCAAGCCTAATCCTCCTATCCCTCCTCCCCCAGGTCCTGTAAGATGTAATTTGTTTACTCACTGTTCAGAAGGAGAAACATGTTGCTGTGCCAAGAGCTTTCTTGGAATATGCTTTTCTTGGAAATGCTGTGGGTTAACTTCTGCCGTGTGCTGCAAAGACAAGCGCCACTGTTGCCCCCAAGATTATCCGATTTGTGATACAAGAAGAGGTCAATGTTTAAAGAGAACTGCAAATGGGACGACAACAATCACTTCTGAGAACCAAGATTTTTCCCACAAGTCAAGAGGTTGGAAATCTCAGTGA 1320 0.4364 MTRLYSLSLLQFLSLILLFTLFFLSASDTSELFEKWCKEHSKTYSSEEEKLYRLKVFEDNYAFVAQHNQNANNNNNNPSYTLSLNAFADLTHHEFKTTRLGLPPTLLRFKRPQNQQSRDLLHIPSQIDWRQSGAVTPVKDQASCGACWAFSATGAIEGINKIVTGSLLSLSEQELIDCDTSYNSGCGGGLMDFAYQFVIDNKGIDTEEDYPYQARQRSCSKDKLKRRAVTIEDYVDVPPSEEEILKAVASQPVSVGICGSEREFQLYSKGIFTGPCSTFLDHAVLIVGYGSENGVDYWIVKNSWGKYWGMNGYIHMIRNSGNSKGICGINTLASYPVKTKPNPPIPPPPGPVRCNLFTHCSEGETCCCAKSFLGICFSWKCCGLTSAVCCKDKRHCCPQDYPICDTRRGQCLKRTANGTTTITSENQDFSHKSRGWKSQ* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0249 439 Pfam Granulin 365 412 IPR000118 -
Gso4g0249 439 Pfam Papain family cysteine protease 123 336 IPR000668 GO:0006508|GO:0008234
Gso4g0249 439 SMART pept_c1 123 337 IPR000668 GO:0006508|GO:0008234
Gso4g0249 439 Pfam Cathepsin propeptide inhibitor domain (I29) 33 95 IPR013201 -
Gso4g0249 439 SMART Inhibitor_I29_2 33 95 IPR013201 -
Gso4g0249 439 Gene3D Cysteine proteinases 22 339 - -
Gso4g0249 439 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 19 371 - -
Gso4g0249 439 SUPERFAMILY Granulin repeat 351 384 - -
Gso4g0249 439 SUPERFAMILY Cysteine proteinases 28 337 IPR038765 -
Gso4g0249 439 CDD Peptidase_C1A 124 336 IPR039417 -
Gso4g0249 439 SMART GRAN_2 354 411 IPR000118 -
Gso4g0249 439 Gene3D Granulin 351 421 IPR037277 -
Gso4g0249 439 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 297 316 IPR025661 -
Gso4g0249 439 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 141 152 IPR000169 -
Gso4g0249 439 PANTHER OS05G0508300 PROTEIN 19 371 - -
Gso4g0249 439 PRINTS Papain cysteine protease (C1) family signature 141 156 IPR000668 GO:0006508|GO:0008234
Gso4g0249 439 PRINTS Papain cysteine protease (C1) family signature 282 292 IPR000668 GO:0006508|GO:0008234
Gso4g0249 439 PRINTS Papain cysteine protease (C1) family signature 297 303 IPR000668 GO:0006508|GO:0008234
Gso4g0249 439 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 280 290 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0249 Gso-Chr4 2302644 2306002 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0249 - - gmx:100805596 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0249 4 2302644 2306002 Gso4g0249 4 2302644 2306002 ECH