Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0181 ATGGCCACCGTCACTTCTGCAGCCGTTGCTATTCCCTCATTCACTGGCCTCAAGGCAAGCGCAGGCAAAGTGAGTGCCGCAGTTAAAGTCTCAGCTCCCCAAGCCACAAGGTTGGGCATCAAGGCTTCGCTGAAAGACGTTGGAGTCGCTGTTGTGGCCACTGCCGCGAGTGCAGTGCTGGCTAGCAACGCCATGGCCATTGAAGTGTTGCTGGGTGGTGATGACGGGTCTCTGGCTTTCGTTCCCAACAATTTCTCCGTGGCCTCTGGGGAGAAGATCGTGTTCAAGAACAACGCAGGTTTCCCCCACAACGTTGTGTTCGACGAGGACGAGATTCCTAGCGGCGTGGATGCAGGGAAAATCTCCATGAGCGATGAAGACCTTCTCAATGCGCCTGGTGAGACTTACAGCGTTACTTTGGATGCTAAGGGAACCTACAGTTTCTTCTGTTCGCCTCACCAAGGAGCTGGTATGGTGGGAAAAGTCACTGTTAATTAA 498 0.5361 MATVTSAAVAIPSFTGLKASAGKVSAAVKVSAPQATRLGIKASLKDVGVAVVATAASAVLASNAMAIEVLLGGDDGSLAFVPNNFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDAGKISMSDEDLLNAPGETYSVTLDAKGTYSFFCSPHQGAGMVGKVTVN* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0181 165 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 1 165 - -
Gso4g0181 165 PRINTS Plastocyanin signature 72 91 IPR002387 GO:0005507|GO:0009055
Gso4g0181 165 PRINTS Plastocyanin signature 95 113 IPR002387 GO:0005507|GO:0009055
Gso4g0181 165 PRINTS Plastocyanin signature 144 163 IPR002387 GO:0005507|GO:0009055
Gso4g0181 165 Pfam Copper binding proteins, plastocyanin/azurin family 68 165 IPR000923 GO:0005507|GO:0009055
Gso4g0181 165 CDD Plastocyanin 67 165 IPR002387 GO:0005507|GO:0009055
Gso4g0181 165 PANTHER PLASTOCYANIN 1 165 - -
Gso4g0181 165 ProSitePatterns Type-1 copper (blue) proteins signature. 144 158 IPR028871 -
Gso4g0181 165 PRINTS Type I copper blue protein family signature 86 99 IPR001235 GO:0005507|GO:0009055
Gso4g0181 165 PRINTS Type I copper blue protein family signature 101 116 IPR001235 GO:0005507|GO:0009055
Gso4g0181 165 PRINTS Type I copper blue protein family signature 142 156 IPR001235 GO:0005507|GO:0009055
Gso4g0181 165 SUPERFAMILY Cupredoxins 64 165 IPR008972 -
Gso4g0181 165 TIGRFAM cyanin_plasto: plastocyanin 67 165 IPR002387 GO:0005507|GO:0009055
Gso4g0181 165 Gene3D - 67 165 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0181 Gso-Chr4 1603031 1603828 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0181 K02638 - gmx:100306554 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0181 4 1603031 1603828 Gso4g0181 4 1603031 1603828 ECH
Gso4g0181 4 1603031 1603828 Gso6g0164 6 1545627 1546404 GST