Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0180 ATGCAACACGTGGTAGGTGGCTGGTGGCTTATGGTGAGTATCTGTATATATACGTTCATCAACCGCGTCCAAATCAAAAATCCCCTCCAGTTAGCAAAAATGCCTTCACTAGTTGCTGAAGCATTCCAAGCCAATGGCGCAGAACCCTTGAACCTGAAGCCCATTTTCTGTGCCTCAGGCATCAAGGGCAAGCGAGTGACTGCGTTGTCAGCAGAAAAAAATGGCCTCACTGATTTCATTCAAAGAATCATTGCTGACAAACCAGACATCGACACACCATTCAGCGTCCTCGATTTGGGGGTCGTCATGGGCCTGATGGACCAATGGGCCTGCAAGCTCCCCACGGTCCAGCCCTTCTACGCCGTCAAGTGCAACCCAAACCTCTCCCTCATCGGTGCGCTCGCTGCGCTCGGCTCCAGCTTCGACTGCGCCAGCAAAGCCGAGATCGAATCCGTTCTCTCCCTCGGAGTCTCACCCGACAGAATCATCTATGCAAACCCATGCAAATCCGAGTCACACATCAGATACGCCGCCTCCGTAGGCGTCAACGTCACAACCTACGACTCCATAGACGAGGTCGAGAAAATCCGAAAATGCCACCCCACGTGCGAGTTGCTCCTCCGCATTAAACCCCCGCAAGACAGCGGAGCGCGAACCAGCTTGGGCCTCAAATACGGCGCGCTTCCCGAGGAAGTCGATGAGCTTCTCCAAGCTGCTCACGAGGCGGGGCTCAAGGTGACCGGCGTGTCCTTCCACATTGGTAGCGGCGGAGCCGACACGCGAGCCTACCACGGAGCCATATCCGCCGCTAAAAACGTCTTCGAATCGGCTTCTCGGCTCGGCTTGCCCAGAATGGGCGTCCTCGACATCGGCGGCGGCTTCACCTCTGGGCCGTCGTTCGAAGCCGCGGCTTTGAAAATAAACGCCGCGATTGAAGGCAGCTTCGGGAAGGAGGAGGGGCTGGTGGTGATTGGCGAGCCGGGTCGTTATTTCGCGGAAACGGCTTTCACGTTGGCGACGAGAGTTATTGGAAAGCGCGTCAGGGGGGACGTGAGGGAGTATTGGATTGACGATGGGATTTACGGAACTCTTAATAACATCGTGTTTGATTACGCTACCGTCACGTGCATGCCACTCGCGTGCACCTCGAAACCGGAGAATCCTACATGCTGCAGGGATTTGAATTTGAAGACTTACCCTAGCACCGTGTTTGGACCCACATGCGATTCTATTGATACGGTTCTGAGGGATTACCAGCTCCCGGAACTGCAAGTGAACGATTGGCTTGTGTTCCCGAACATGGGTGCCTATACGACGTCGTCCGGGACTAACTTCAATGGGTTTAGCTCCTCAGCCAAGTCCATATTCCTTGCATGTTCGAGCCCGGAACACACCATGTTCTAA 1404 0.5484 MQHVVGGWWLMVSICIYTFINRVQIKNPLQLAKMPSLVAEAFQANGAEPLNLKPIFCASGIKGKRVTALSAEKNGLTDFIQRIIADKPDIDTPFSVLDLGVVMGLMDQWACKLPTVQPFYAVKCNPNLSLIGALAALGSSFDCASKAEIESVLSLGVSPDRIIYANPCKSESHIRYAASVGVNVTTYDSIDEVEKIRKCHPTCELLLRIKPPQDSGARTSLGLKYGALPEEVDELLQAAHEAGLKVTGVSFHIGSGGADTRAYHGAISAAKNVFESASRLGLPRMGVLDIGGGFTSGPSFEAAALKINAAIEGSFGKEEGLVVIGEPGRYFAETAFTLATRVIGKRVRGDVREYWIDDGIYGTLNNIVFDYATVTCMPLACTSKPENPTCCRDLNLKTYPSTVFGPTCDSIDTVLRDYQLPELQVNDWLVFPNMGAYTTSSGTNFNGFSSSAKSIFLACSSPEHTMF* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0180 467 PRINTS Ornithine decarboxylase signature 92 116 IPR002433 GO:0006596
Gso4g0180 467 PRINTS Ornithine decarboxylase signature 118 145 IPR002433 GO:0006596
Gso4g0180 467 PRINTS Ornithine decarboxylase signature 162 186 IPR002433 GO:0006596
Gso4g0180 467 PRINTS Ornithine decarboxylase signature 192 214 IPR002433 GO:0006596
Gso4g0180 467 PRINTS Ornithine decarboxylase signature 358 371 IPR002433 GO:0006596
Gso4g0180 467 PRINTS Ornithine decarboxylase signature 402 412 IPR002433 GO:0006596
Gso4g0180 467 PRINTS Ornithine decarboxylase signature 422 435 IPR002433 GO:0006596
Gso4g0180 467 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 278 295 IPR022657 -
Gso4g0180 467 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 333 435 IPR022643 GO:0003824
Gso4g0180 467 PANTHER ORNITHINE DECARBOXYLASE-LIKE 63 461 - -
Gso4g0180 467 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 120 138 IPR000183 GO:0003824
Gso4g0180 467 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 140 152 IPR000183 GO:0003824
Gso4g0180 467 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 243 256 IPR000183 GO:0003824
Gso4g0180 467 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 323 342 IPR000183 GO:0003824
Gso4g0180 467 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 435 448 IPR000183 GO:0003824
Gso4g0180 467 Gene3D Alanine racemase 102 331 IPR029066 -
Gso4g0180 467 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 105 332 IPR022644 GO:0003824
Gso4g0180 467 SUPERFAMILY PLP-binding barrel 91 335 IPR029066 -
Gso4g0180 467 CDD PLPDE_III_ODC 91 452 - -
Gso4g0180 467 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 120 138 IPR022653 -
Gso4g0180 467 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 90 452 IPR009006 GO:0003824
Gso4g0180 467 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 63 461 IPR002433 GO:0006596
Gso4g0180 467 SUPERFAMILY Alanine racemase C-terminal domain-like 318 450 IPR009006 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0180 Gso-Chr4 1598673 1600533 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0180 K01581 - gmx:548088 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0180 4 1598673 1600533 Gso4g0180 4 1598673 1600533 ECH