Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0151 ATGGACCTTCGGCTAGGGTTTTTCCGTTCATTATCTTGCTTACAGTTTTTTCTAATTTTATCTTTGGTAGAAGCAAACAATTTCTCAACAAGGCTTCTTTTGACTTCCAATGCCAACACAACGGGGGAAAGGCATTCCGAGGATTATTGTGCAATGTATGACATTTGTGGAACGCGCAGTGATGGTAAAGTAGTGAACTGTCCATATGGTTCCCCGGCTGTGAAGCCAGATGATTTGCTTTCATCAAAGATCCAAAGTTTGTGTCCAACAATTACTGGGAACGTTTGTTGTACAGAAGCTCAGTTTGAAACATTAAGGACGCAAGTCCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCAGCATGCTTAAGAAACTTTTTGAATCTGTTCTGTGAGCTTACATGTTCTCCAAATCAGAGTTTATTTATCAATGTGACTTCAGTTGACAATGTTGGTGGTAATTTGACAGTGGGTGGGATTGATTATTTTGTAACTGATGCTTTTGGTGAAGGGTTATATGAATCCTGCAAGGAGGTAAAGTTTGGCACTATGAATTCTCGAGCTCTACAATTTATTGGTGCCGGTGCTCAAAATTATAAAGACTGGTTTTCTTTTATTGGTAGAAAAGCTGCCCCTCATGGTCTTGGTTCACCTTATGCAATTACATTCTGGCCAAATGCAACCGCATCATCTGACATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATATTTCTCTTGGCTGTTCTTGTGGTGACTGTCCTTCGTCTTCAGTATGCTCTAATTCAGCTTCAACTACCACCAATAAGAAGGATTCCTGCTCAGTGAAAGTTGGGACTTTAATGGTGAAGTGTGTTGACTTGAGTTTAGCAGTCTTATACATTATATTGATTTGCGTGTTCTTGGGTTGGGGGTTGTATCATCGGATAAGGGAAAGAAAACCGACGTACAGAACAAAATCAGTGTCCAATGTCATTAGTGATGGTGCGCTGTATTCTCATAATAGGGAGAAGGATGAGAACCTCCCAATGCAGATTCATATGATGGAAGATGCTCAACAAAACAGAAATAGAGTTCGGCTCTCGGCTGTACAAGGATATATGACAAATTTTTACAGGAAATATGGATCATATGTAGCTAGACATCCAATTATGGTGCTGGCTTCATCCCTGGCTATAGTTCTTCTCCTCTGTCTAGGTCTAATCCGATTCAAGGTTGAGACACGACCTGAGAAGCTCTGGGTAGGACCTGGGAGTAAAGCAGCACAAGAGAAGCAGTTTTTTGACACTCATCTTGCTCCATTTTACAGAATTGAACAGCTCATTCTGGCCACTGTTCCAGATCATGTAAATAGTACATCAACAAGAATTGTGTCAGAGGACAACATTAGGTTTCTGTTTGAAATACAGAAAAAGGTTGATGCAATTCGTGCTAATTATTCTGGCTTGACGGTATCTCTCCAAGACATCTGTATGAAGCCACTAGACAAAGATTGTGCCACTCAAAGTGTCCTTCAGTACTTCAAAATGGATCTAAAAAATTTTGATGATTATGGGGGCATAGAGCATCTCAATTACTGTTTTGAGCATTATTCCTCAGCAGACCATTGTATGAGTGCATTTAAAGCTCCTCTGGATCCAAGCACTGTATTAGGAGGTTTTTCTGGGAATGATTATTCTGAGGCATCTGCGTTCATCGTAACATATCCAATAAATAATGCTATTAATGAAGAAGGTAATGGAACCAGAAAGGCAGTTGCTTGGGAGAAGACCTTTATTCAGTTGGTGAAGGATGAGCTGTTACCGATGGTACAATCAAGAAATTTGACACTGGCTTTTTCATCTGAAAGCTCTGTTGAGGAAGAATTGAAAAGAGAAAGTACTGCAGATGCTATTACGATATTGGTTAGCTATCTTGTGATGTTTGCTTACATATCTCTTACTTTAGGGGATACCCTCCACCCTTCGTCTTTCTATATTTCATCTAAGGTGATGCTTGGTCTTTCAGGAGTAATTCTTGTTATGCTGTCTGTCATTGGATCAGTTGGATTTTTTAGTGTGCTTGGTATAAAATCTACTCTGATCATCATGGAAGTTATCCCATTTCTTGTCCTAGCTGTTGGGGTGGATAATATGTGTATACTAGTTCATGCTGTAAAAAGACAAAAGCTGGAGTTGCCCTTAGAAGGACGAATAAGCAATGCACTTGTTGAAGTTGGACCATCAATAACATTGGCCAGTGTATCAGAGGTTTTAGCATTTGCAGTTGGGAGTTTTATTTCCATGCCTGCAATTCGTGTGTTCTCCATGTTTGCTGCATTGGCTGTTCTTTTGGACTTCCTCCTGCAAGTTACCGCTTTTGTAGCTCTGATAGTTCTTGACTCCTTACGGGCAGAGGATAAGAGAGTTGATTGTTTTCCATGCATAAAAGTACATGCGGACCCTGATATAGGAACTGGACGAAGAAAACCTGGTTTATTGGCTCGATACATGAAGGAGGTTCATGCTCCCATTCTGAGTATTTGGGGAGTAAAAATAGTTGTCATAGCTATTTTTGTGGGATTTGCATTGGCTAGCATTGCATTGAGCACTAGAATTGAACCTGGTTTAGAACAAGAGATTGTTCTTCCTCGAGATTCATATCTTCAGGGTTATTTCAATAATGTTTCAGAATATCTCAGAATTGGACCTCCTGTGTATTTTGTTGTGAAAAACTATAACTACAGCTCAGAATCAACGCATACAAATCAGCTTTGCTCCATTAGCCATTGCAATTCAGACTCTCTTTTAAATGAGATTGCTAGAGCGGCCCTTGTACCAGACACAAGTTATATTGCCAAGCCAGCTGCCTCATGGCTTGATGATTTTCTTGTGTGGGTGTCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTTACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGGGGAAAGCTCTTGTGTTTCAGTAGGAACATGTAAAGATTGCACAACGTGTTTCCGTCACTCAGATCTCCATAATGATCGTCCATCTACAACACAATTTAGGGAGAAACTGCCATGGTTTCTTAGTTCTCTGCCATCTGCTGATTGTGCAAAAGGTGGTCATGGAGCTTACACCAGCAGTGTTGAACTGAAAGGCTACGACAATGGCATTATTAAAGCATCGTCATTTCGTACTTATCATACCCCACTCAACAAGCAGATTGACTATGTTAATTCTATGAGGGCTGCTCGAGAGTTCAGTTCAAGAGTTTCTGATTCTTTGAAGATTGAGATCTTTCCATATTCAGTGTTTTATATGTTTTTTGAGCAATACCTTCATATATGGAAGACTGCACTGGTCAACCTTGCTATAGCTATTGGTGCAGTATTTATTGTGTGCTTGGTTATCACGAGCAGTTTATGGAGCTCATCAATCATTTTGTTGGTATTGGCAATGATTGTGGTTGATCTTATGGGTGTGATGGCCATTCTGAATATCCAATTGAATGCACTCTCGGTGGTCAACCTTGTTATGTCAGTGGGCATTGCTGTTGAGTTTTGTGTGCATATGACTCATTCTTTCACTGTAGCAAGTGGAGACAGAGATCAACGTGCTAAGGAGGCTTTGGGTACAATGGGTGCTTCAGTGTTCAGTGGTATCACACTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTCTCAAGAACAGAAGTGTTTGTGATTTATTACTTTCGGATGTACTTGTCATTGGTACTTCTTGGTTTCTTGCATGGACTTGTTTTCTTGCCGGTAGTATTAAGCATCTTTGGTCCACCTTCAAGATGTTCAATCATTGAGCAAGAGGAAGATCGTTCATCAACCTCTTCATAG 3876 0.4045 MDLRLGFFRSLSCLQFFLILSLVEANNFSTRLLLTSNANTTGERHSEDYCAMYDICGTRSDGKVVNCPYGSPAVKPDDLLSSKIQSLCPTITGNVCCTEAQFETLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVDNVGGNLTVGGIDYFVTDAFGEGLYESCKEVKFGTMNSRALQFIGAGAQNYKDWFSFIGRKAAPHGLGSPYAITFWPNATASSDMKPMNVSTYSCGDISLGCSCGDCPSSSVCSNSASTTTNKKDSCSVKVGTLMVKCVDLSLAVLYIILICVFLGWGLYHRIRERKPTYRTKSVSNVISDGALYSHNREKDENLPMQIHMMEDAQQNRNRVRLSAVQGYMTNFYRKYGSYVARHPIMVLASSLAIVLLLCLGLIRFKVETRPEKLWVGPGSKAAQEKQFFDTHLAPFYRIEQLILATVPDHVNSTSTRIVSEDNIRFLFEIQKKVDAIRANYSGLTVSLQDICMKPLDKDCATQSVLQYFKMDLKNFDDYGGIEHLNYCFEHYSSADHCMSAFKAPLDPSTVLGGFSGNDYSEASAFIVTYPINNAINEEGNGTRKAVAWEKTFIQLVKDELLPMVQSRNLTLAFSSESSVEEELKRESTADAITILVSYLVMFAYISLTLGDTLHPSSFYISSKVMLGLSGVILVMLSVIGSVGFFSVLGIKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQKLELPLEGRISNALVEVGPSITLASVSEVLAFAVGSFISMPAIRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVHADPDIGTGRRKPGLLARYMKEVHAPILSIWGVKIVVIAIFVGFALASIALSTRIEPGLEQEIVLPRDSYLQGYFNNVSEYLRIGPPVYFVVKNYNYSSESTHTNQLCSISHCNSDSLLNEIARAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPGESSCVSVGTCKDCTTCFRHSDLHNDRPSTTQFREKLPWFLSSLPSADCAKGGHGAYTSSVELKGYDNGIIKASSFRTYHTPLNKQIDYVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLHIWKTALVNLAIAIGAVFIVCLVITSSLWSSSIILLVLAMIVVDLMGVMAILNIQLNALSVVNLVMSVGIAVEFCVHMTHSFTVASGDRDQRAKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFRMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCSIIEQEEDRSSTSS* 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0151 1291 ProSiteProfiles Sterol-sensing domain (SSD) profile. 631 794 IPR000731 -
Gso4g0151 1291 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 608 794 - -
Gso4g0151 1291 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1081 1272 - -
Gso4g0151 1291 TIGRFAM 2A060601: Niemann-Pick C type protein family 50 1272 IPR004765 GO:0005319|GO:0016021
Gso4g0151 1291 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 6 1290 - -
Gso4g0151 1291 Pfam Niemann-Pick C1 N terminus 48 277 IPR032190 -
Gso4g0151 1291 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1079 1276 - -
Gso4g0151 1291 Gene3D Multidrug efflux transporter AcrB transmembrane domain 583 800 - -
Gso4g0151 1291 Pfam Patched family 450 907 IPR003392 GO:0016021
Gso4g0151 1291 Pfam Patched family 1055 1271 IPR003392 GO:0016021
Gso4g0151 1291 PANTHER PATCHED FAMILY PROTEIN 6 1290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0151 Gso-Chr4 1332816 1349926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0151 44 1291 Miscellaneous Gene Families AT1G42470 72.982 0.0 1855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0151 K12385 - gmx:100813262 2531.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0151 4 1332816 1349926 Gso4g0151 4 1332816 1349926 ECH