Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0146 ATGGCGGGACCCAACATGGATCAGTTCGAAGCGTTTTTCAGGAGAGCAGATTTGGACGGAGATGGCAGAATCAGTGGAGCCGAAGCCGTCTCATTCTTTCAGGGATCCAATTTGCCCAAACAAGTCCTCGCTCAGGTGTGGGCGTATGCTGATCAGGCCAAAACGGGTTTCCTTGGGCGCGCGGAGTTTTTTAATGCTCTAAGGTTAGTCACTGTGGCTCAGAGTAAGCGAGATTTAACGCCTGATATTGTGAAGGCAGCTTTGTATGGTCCTGCTGCTGCTAAAATCCCTGCCCCACAGATTAATCTTGCTGCTGTGCCTCAACCACGCCCGAATTCGATGCCCGGTGCTGGGTCTGTCGGGCAGATGGGTGTTACCGCACCCAATTTGGCTCAAAGTTTTCCCTATAGAGGACAAGGGTTGGCAGGTCCTGGTGCAAACCCGCAATATTATCCTTCGCAGCAGCATCCTGGCATGAGACCTCCTCAATCCATGCCTGCTGGTGGCGGTCTGCGTCCACAACAGGGTGTTGCAGGTCCAGATATTTCTAGAGGAGTTAACATAGCTGGTCACAATTTCTCAAATCCTGGCGTCGTCTCGAATGATTGGAATAATGTAAGGCCTGGTATGGTTGCTACCAGACCTGCTGGACTGACCCCATCAGCTGCATTACCGTCATCAACATCTCCAATCTCACCAATGCCGCAGTCATCTCCAATCTCACCAATGCCCCAGTCTACAACTGTTAACACTAAAGCATTAGGTGTATCTGGAAATGGGTTCTCCTCCAATTCAGTTTTGGGCAATGATTTTTTCTCTGCTGCCTCATTGACACCGAAACAAGAACCTGCTGGACTGAGTTACTCTGTCAGCAATGTCTCATCAGCCATTGTTCCTGTTTCCACTGCTCCCCAACCTGCAATTAAGCAAAATTCTCTTGACTCATTGCAGAGTGCATATTCTTCAATGCTGCCTGCAAATAGTCAGTTTCAGCGGGCACAATCTGCACCAAACATAAGCCAACAAATTTCACCACCAGCTTCTTCTTCTCCAAATACACCATCTGGGCTTGGAAATGCAAATTCTGACAATTCACATCTTTCTTGGCCAAAAATGAAACCTACTGATGTGCAGAAGTATACAAAGGTGTTTATGGAAGTTGACACCGACAGGGATGGGAAAATCACTGGGGAGCAGGCACGCAGTCTATTTTTAAGCTGGAGATTACCCATAGATGTCTTAAAGAAGGTGTGGGACTTGTCTGATCAGGATAATGATAGCATGCTTTCTTTGAAGGAGTTTTGCTTTGCTCTTTATTTGATGGAACGTTACAGGGAAGGTCGTCCTCTTCCAGAGTCTCTTCCAAGCAATGTTTTGTTTGACGAGACACTGATGTCAATGATAGGCCAACCAAAAATTGCTTATGGAAATGCAGGCTGGGGTATTGGCCAAGGTTTTCAGCAGCAACAAGGGATTCCAGGTGCTCGGCCAGTGGCACCAACAGCTGGTTTGAGGCCACCAGTTCAGGGAAGTTCTGCCCAGGCTGATGGCACTCAACAGCCCAATCAGCAAAAGTCAGGAACACCTGTGTTGGACGATTCCTTTTTGAATCGTGCAGAAAATGGTGAGCAGAATATATTGAATTCAAAGCCTCAAGAGGCAACAACTGCGGAGAAAAAGTTTGAAGAAACTCAGAATGTGATTTTGGATTCAAAAGAGAAGCTTGAGTTATACCGCAACAAAATGCAGGAACTGGTTCTATATAAAAGCAGATGCGATAATCGACTAAATGAGATTACGGAAAGGGCATCTGCGGATAAGCGTGAGGCAGAATCATTGGGCAAGAAATATGAAGAGAAATACAAACAAGTAGCAGAAATAGTATCAAAATTGACCGTTGAAGAAGCTAAATTTCGTGATATACAGGATAGGAAGGTGGAGTTGCAGCAAGCAATTGTCAAAATGGTACAAGGAGGCAGTGCAGATGGTATCCTTCAGGTCCGTGCTGAACGCATACAGTCAGATCTCGAGGAGTTATTTAAGGCTCTAGCCGAACGGTGCAAGAAACATGGGCTAGATGTGAAGTCAATTACAATGGTTCAGCTTCCTGCTGGTTGGCAACCTGGAATTCCAGAGGGAGCAGCTCTTTGGGATGAAGATTGGGATAAATTTGAGGATGAAGGATTTGCTAATGATCTCACTTATACATCTTCAAAACCGAAGTCGGCATTTATTGATGGAGAACAAAATTTATCTGATGATAATTCTGTTCATGGTTCACCTGTGAATGCAAATGGGAAGCAAGAAAATTCTGCTAATGGTGATTATACAGTTGAGGATGAATCCTATGCACACAGTGAAGATGACCTGGCAAGAATCCCCCATAGTCTAGCTGGGAGGAGTACGGTGGAGAGTCCTTCTCAAGACTTTTCAAATTCTCATTTTGGAAAAAGTTTTGAAGCAGATGCAGAAACACACAGAAGTTTTGATGAATCAACCTGGGGTGCATTTGACAACAACGATGATGTGGACTCAGTGTGGGGTTTTAACACCAAGACCAAGGACTCTGACTTCGAGCAGAGAGATTTCTTTAAATCTGATGATTTTGGTATAAACCCAGTTAGAACAGGATCTACACATACAGATGGCACGTTCCAGACGAAAAGCCCATTTGCTTTTGATGATTCAGTGCCTGCAACTCCAGTTTCCAAATTTGCTTTTGATGATTCAGTGCCTGCAACTCCAGTTTCCAAGTTCGAAAACTCTCCAAGGTACAGTGAGGCAGGGGATCACTTCTTTGACATGTCAAGGTTTGATTCCTTCAGGCACGAAAGTGGATATTCTCCACAACCAGAGAGGCTCACGAGATTTGATTCAATAAGTAGCAGCAAGGATTTTGGCTACAATAATCATAAATTCACAAGGTTTGACTCCATAAGTAGCAGCAAGGATTTTGGCTCCAATCCTGAGACGCTCACAAGGTTTGATTCCATGAGTAGCAGCAACGATTTTGGCTTTGGTCGTCAGGGACATGCAAGGTTTGACTCAATTAGTAGCACCAAGGACTTCGGTCACAGTGGTCCATTCTCTTTTGATGACTCTGATCCATTCGGCTCCTCTGGCCCTTTTAAGGTCTCTTCTGAAAATCATTCTCCGAAGAAAGGTTCAGATAACTGGAGTGCATTCTAG 3189 0.4506 MAGPNMDQFEAFFRRADLDGDGRISGAEAVSFFQGSNLPKQVLAQVWAYADQAKTGFLGRAEFFNALRLVTVAQSKRDLTPDIVKAALYGPAAAKIPAPQINLAAVPQPRPNSMPGAGSVGQMGVTAPNLAQSFPYRGQGLAGPGANPQYYPSQQHPGMRPPQSMPAGGGLRPQQGVAGPDISRGVNIAGHNFSNPGVVSNDWNNVRPGMVATRPAGLTPSAALPSSTSPISPMPQSSPISPMPQSTTVNTKALGVSGNGFSSNSVLGNDFFSAASLTPKQEPAGLSYSVSNVSSAIVPVSTAPQPAIKQNSLDSLQSAYSSMLPANSQFQRAQSAPNISQQISPPASSSPNTPSGLGNANSDNSHLSWPKMKPTDVQKYTKVFMEVDTDRDGKITGEQARSLFLSWRLPIDVLKKVWDLSDQDNDSMLSLKEFCFALYLMERYREGRPLPESLPSNVLFDETLMSMIGQPKIAYGNAGWGIGQGFQQQQGIPGARPVAPTAGLRPPVQGSSAQADGTQQPNQQKSGTPVLDDSFLNRAENGEQNILNSKPQEATTAEKKFEETQNVILDSKEKLELYRNKMQELVLYKSRCDNRLNEITERASADKREAESLGKKYEEKYKQVAEIVSKLTVEEAKFRDIQDRKVELQQAIVKMVQGGSADGILQVRAERIQSDLEELFKALAERCKKHGLDVKSITMVQLPAGWQPGIPEGAALWDEDWDKFEDEGFANDLTYTSSKPKSAFIDGEQNLSDDNSVHGSPVNANGKQENSANGDYTVEDESYAHSEDDLARIPHSLAGRSTVESPSQDFSNSHFGKSFEADAETHRSFDESTWGAFDNNDDVDSVWGFNTKTKDSDFEQRDFFKSDDFGINPVRTGSTHTDGTFQTKSPFAFDDSVPATPVSKFAFDDSVPATPVSKFENSPRYSEAGDHFFDMSRFDSFRHESGYSPQPERLTRFDSISSSKDFGYNNHKFTRFDSISSSKDFGSNPETLTRFDSMSSSNDFGFGRQGHARFDSISSTKDFGHSGPFSFDDSDPFGSSGPFKVSSENHSPKKGSDNWSAF* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0146 1062 Pfam Cytoskeletal-regulatory complex EF hand 370 456 IPR000261 GO:0005515
Gso4g0146 1062 MobiDBLite consensus disorder prediction 135 180 - -
Gso4g0146 1062 SMART eh_3 369 464 IPR000261 GO:0005515
Gso4g0146 1062 SMART eh_3 1 93 IPR000261 GO:0005515
Gso4g0146 1062 MobiDBLite consensus disorder prediction 217 252 - -
Gso4g0146 1062 Gene3D - 370 459 - -
Gso4g0146 1062 SMART efh_1 42 70 IPR002048 GO:0005509
Gso4g0146 1062 SMART efh_1 413 441 IPR002048 GO:0005509
Gso4g0146 1062 SMART efh_1 8 36 IPR002048 GO:0005509
Gso4g0146 1062 SMART efh_1 379 407 IPR002048 GO:0005509
Gso4g0146 1062 ProSiteProfiles EH domain profile. 5 95 IPR000261 GO:0005515
Gso4g0146 1062 PANTHER EH DOMAIN 1 905 - -
Gso4g0146 1062 PANTHER EH DOMAIN 903 969 - -
Gso4g0146 1062 PANTHER EH DOMAIN 992 1062 - -
Gso4g0146 1062 ProSiteProfiles EH domain profile. 376 459 IPR000261 GO:0005515
Gso4g0146 1062 CDD EH 380 446 IPR000261 GO:0005515
Gso4g0146 1062 MobiDBLite consensus disorder prediction 744 774 - -
Gso4g0146 1062 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Gso4g0146 1062 MobiDBLite consensus disorder prediction 330 371 - -
Gso4g0146 1062 Pfam EF hand 10 26 IPR002048 GO:0005509
Gso4g0146 1062 SUPERFAMILY EF-hand 366 458 IPR011992 -
Gso4g0146 1062 CDD EH 9 75 IPR000261 GO:0005515
Gso4g0146 1062 MobiDBLite consensus disorder prediction 507 531 - -
Gso4g0146 1062 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 903 969 - -
Gso4g0146 1062 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 992 1062 - -
Gso4g0146 1062 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 905 - -
Gso4g0146 1062 MobiDBLite consensus disorder prediction 486 534 - -
Gso4g0146 1062 MobiDBLite consensus disorder prediction 1040 1062 - -
Gso4g0146 1062 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Gso4g0146 1062 MobiDBLite consensus disorder prediction 220 234 - -
Gso4g0146 1062 Gene3D - 4 95 - -
Gso4g0146 1062 SUPERFAMILY EF-hand 5 84 IPR011992 -
Gso4g0146 1062 MobiDBLite consensus disorder prediction 330 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0146 Gso-Chr4 1255576 1266079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0146 1 1062 EF-hand Containing Proteins AT1G20760 52.712 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0146 K12472 - gmx:100818930 2025.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0146 4 1255576 1266079 Gso4g0146 4 1255576 1266079 ECH