Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0114 ATGGCTCAGCCGCTTGTGAAGAAAGACGATGACCGCGACGACGAAGCTGACTATTCCCCCTTTCTTGGAATTGAAAAGGGGTCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAGGTTATTACAAAACTCCTATACCTACTGAATCAGGGAGAGACGTTTACAAAGGTTGAAGCCACAGAAGTTTTCTTTGCTGTGACTAAGCTTTTCCAGTCTAAAGATACGGGATTAAGGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCAGATGAGGTTATCATCGTCACAAGCTCTCTCATGAAGGATATGAACAGCAAGATTGATATGTACCGAGCAAATGCCATTCGAGTGCTGTGTTGTATCACTGACGGAACCCTCCTTTCACAAATTGAGAGGTATTTAAAACAAGCCATTGTAGATAAAAATCCAGTTGTTGCAAGTGCTGCTCTAGTTAGTGGCATTCATCTACTCCAGACAAATCCTGAAATTGTAAAAAGATGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGCCCTTGTACAATTTCATGCACTGGGTTTGCTGCATCAGATACGACAGAATGACCGGCTAGCAGTTAGCAAGCTGGTTACCAGCTTGACCAGGGGAACTGTTCGCTCACCTTTAGCGCAGTGCCTTTTGATCCGTTACACAAGTCAGGTTATTCATGAATCAGGCCATACACAGTCAGGGGAACGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGCCACAAGTCCGACATGGTGATTTTTGAAGCTGCCAGGGCAATAACAGAGCTCAATGGTGTAACAAGCCGAGAATTAACTCCAGCGATTACTGTTCTTCAGCTATTCTTAAGTTCGACTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCTACCCTCGCTATTACTACACTTTTGAAAACAGGAAATGAATCTAGTGTGGATCGTCTTATGAAGCAGATCACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTGCCTGAAGTTTCCTTTAAAATATCGATCTCTGATGAATTTCCTGAGTAATATTCTTAGGGAGGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTAATGCAAAGGAAGCTGGGTTGCTTCATCTTTGTGAGTTCATAGAAGATTGTGAGTTCACTTATTTGTCCACACAGATACTTCACTTCCTGGGAATTGAAGGACCAAAAACATCAGACCCGAGCAAATATATCCGTTACATTTATAATAGAGTACATCTTGAGAATGCAATTGTTAGGGCCAGTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCTGTTGATGCGCTAAAGCCCCGCATATTTGTTCTGCTAAAGCGATGCCTTTTTGACAGTGATGATGAGGTTCGTGATAGGGCAACACTTTACCTGAACACACTTGGAGGTGATGGTTCAGTTGTTGAGACTGATAAAGATGTAAAGGACTTCCTGTTTGGGCCATTTGATGTCCCACTTGTCAATCTGGAGACTAGTTTGAAAAATTATGAGCCTTCAGAAGAAGCTTTTGACATTAACTCTGTGCCTAAGGAGGTCAAGTTCCAGCCTCTTGCAGAAAAGAAAGCCCCTGGTAAAAAGCCAACTGGTTTGGGTGCTCCCCCAAGTGGTCCCCCATCAACTGCAGATGCATATGAGAGGATGCTTTCAACCATTCCAGAGTGTGCAAACTTTGGGAAGCTTTTCAAGTCCTCAGCACCTGTGGAGCTCACTGAAGCTGAGACAGAATATGCAGTTAATGTCATTAAACACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAAGATGTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCAGAGGGAGTGCCAACAGTTGGAAAATTTTCTAACGTTCTGAAATTTATTATTAAAGAGGTTGACCCAACCACGGGTGAGGCTGAAGATGACGGTGTTGAAGATGAATACCAGCTGGAGGATCTGGAGATTGTTGCAGCAGATTATGTGTTGAAAGTGGGGGTGTCTAATTTTAGGAATGCATGGGAAAGCTTGGGCCCTGATTTTGAGCGTGTGGATGAGTATGGTCTTGGTCCTAGAGAGAGTTTGGCTGAAGCTGTAAATACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAGGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCGGGTGTATTCACAGGGAATATAAAGGTGCTTGTACGGTTGTCTTTTGGACTTGATGGTCCAAAGGATATTGCAATGAAATTGTCTGTCAGATCTGAGGACGAAACTGTCAGCGATACCATTCATGAGATTGTGGCAAGCGGCTAG 2661 0.434 MAQPLVKKDDDRDDEADYSPFLGIEKGSVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSKDTGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCCITDGTLLSQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALGLLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIHESGHTQSGERPFYDYLESCLRHKSDMVIFEAARAITELNGVTSRELTPAITVLQLFLSSTKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPNAKEAGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENAIVRASAVSTLAKFGAAVDALKPRIFVLLKRCLFDSDDEVRDRATLYLNTLGGDGSVVETDKDVKDFLFGPFDVPLVNLETSLKNYEPSEEAFDINSVPKEVKFQPLAEKKAPGKKPTGLGAPPSGPPSTADAYERMLSTIPECANFGKLFKSSAPVELTEAETEYAVNVIKHIFDRHVVFQYNCTNTIPEQLLEDVIVTVDASDADEFSEVFSKPLRSLPYDSPGQTFVAFEKPEGVPTVGKFSNVLKFIIKEVDPTTGEAEDDGVEDEYQLEDLEIVAADYVLKVGVSNFRNAWESLGPDFERVDEYGLGPRESLAEAVNTVINLLGLEPCEGTEEVPPNSRSHTCLLSGVFTGNIKVLVRLSFGLDGPKDIAMKLSVRSEDETVSDTIHEIVASG* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0114 886 Gene3D - 23 315 IPR011989 -
Gso4g0114 886 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 771 883 IPR009028 GO:0006886|GO:0016192|GO:0030117
Gso4g0114 886 Gene3D - 768 884 IPR012295 -
Gso4g0114 886 SUPERFAMILY ARM repeat 31 563 IPR016024 -
Gso4g0114 886 PANTHER COATOMER SUBUNIT GAMMA 1 886 - -
Gso4g0114 886 SUPERFAMILY Clathrin adaptor appendage domain 616 770 IPR013041 -
Gso4g0114 886 Pfam Adaptin N terminal region 29 539 IPR002553 GO:0006886|GO:0016192|GO:0030117
Gso4g0114 886 Pfam Coatomer gamma subunit appendage platform subdomain 621 766 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Gso4g0114 886 MobiDBLite consensus disorder prediction 594 620 - -
Gso4g0114 886 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 769 883 IPR032154 -
Gso4g0114 886 PIRSF Gamma-COP 7 884 IPR017106 -
Gso4g0114 886 Gene3D Coatomer, gamma subunit, appendage domain 616 767 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Gso4g0114 886 PANTHER COATOMER SUBUNIT GAMMA 1 886 IPR017106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0114 Gso-Chr4 1007493 1014729 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0114 K17267 - gmx:100814149 1716.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0114 4 1007493 1014729 Gso4g0114 4 1007493 1014729 ECH