Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0056 ATGATGATTAAGATTTACGTGTATATATATACTTTGTTTGGGGAGCCACGTGTGGGGTTCACAGTTCACACCATTGCTGACAGATACAATAATAATGACCTTCTTCCTTTCCTTCCTCCTGCTCCTCCACTGTGCTTAAACTCATTAATAAACCAAACACAGGCAAAAGAAAAGGGTGTTACTGTGTTAGTGTGTTACCTTTACCACTCAGAAACAATGGAGAGTAAGAGAAAAAATGGTGGGAAGGGAGAGATTGTGGATGGTTCCAAGATTATGGAGTTAGTTGGAAACGAGCAAGTTTTCAGCAACTTTGTGGACCATAAGTTTGATGAGTTGGATAAAGACAGAGATGGCAAACTCTCCATGAAGGAGCTTGAACCTGCCGTTGCTGACATTGGTGCTGGTCTTGGTTTGCCTGCTCAAGGCACTAGTCCTGATTCAGATCACATCTATTTTGAGGTCTTGAATGAATTCACCCATGGCAAGCAAGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTCTCGGACATTCTTTTGGGCATGGCTGCTGGACTAAAGCAAGACCCTATTGTTATACTTCGCATGGATGGGGAAGATCTTCTTGAGTTTGTTAATGGTCCAAGTTATGAAGCAGAAATGGCATCCATTTTTTCTCAGATTGAGTCCCCTAGTGGATCCCTTCGTGAACATGTGATTGAAGCTTTTGGGAGACTCACTGTTGATCAAGGAATTCCTCCAACATCAGATTCTTGGGTTTTCAACAACATTGTGGATCCAGCACTATCTCAAGCTGGCCCTGCTTTGGACAAGCCTGCTGCTCAAGAGACATTTTTGGAAGAATTTAAGAAAGTGGCATTGAGCGTGGTTGATTTTCTTAAAGAGAAACCTGTCATTGTTGCCCACAGTGAAAACACATTTGATGGACGCGGTGTCAAGAGACTTTTATCCAACAAGTTTGAATTAGACAGGACGTTGAACTTAGCTTTAGAGAATCTGCCGAAAGATCGCAACGTAAAAATATCAAAGGACTATCTGCAGATTGATAAGGTTATTGTTGAAGCCTTTAAGATGGTGAATGCAGATGACACCAAGACAGTTAAAGAAGACGAATTCAAGAAAATTTTAAGTGAAATACTGGGTAGTATCACGTTACAGTTAGAGGCAAATCCCATATCTGTTTCTTCCAATTCAGTTGTGCATGAGCCTTTAGGCTCATCTTCTACACTCTTGCAGCCATCTAGTGAAACAGCATAA 1257 0.4129 MMIKIYVYIYTLFGEPRVGFTVHTIADRYNNNDLLPFLPPAPPLCLNSLINQTQAKEKGVTVLVCYLYHSETMESKRKNGGKGEIVDGSKIMELVGNEQVFSNFVDHKFDELDKDRDGKLSMKELEPAVADIGAGLGLPAQGTSPDSDHIYFEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKQDPIVILRMDGEDLLEFVNGPSYEAEMASIFSQIESPSGSLREHVIEAFGRLTVDQGIPPTSDSWVFNNIVDPALSQAGPALDKPAAQETFLEEFKKVALSVVDFLKEKPVIVAHSENTFDGRGVKRLLSNKFELDRTLNLALENLPKDRNVKISKDYLQIDKVIVEAFKMVNADDTKTVKEDEFKKILSEILGSITLQLEANPISVSSNSVVHEPLGSSSTLLQPSSETA* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0056 418 Gene3D - 68 187 - -
Gso4g0056 418 ProSitePatterns EF-hand calcium-binding domain. 113 125 IPR018247 -
Gso4g0056 418 SUPERFAMILY EF-hand 108 383 IPR011992 -
Gso4g0056 418 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 73 416 - -
Gso4g0056 418 ProSiteProfiles EF-hand calcium-binding domain profile. 100 135 IPR002048 GO:0005509
Gso4g0056 418 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 73 416 - -
Gso4g0056 418 SMART efh_1 104 132 IPR002048 GO:0005509
Gso4g0056 418 SMART efh_1 351 379 IPR002048 GO:0005509
Gso4g0056 418 ProSiteProfiles EF-hand calcium-binding domain profile. 347 382 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0056 Gso-Chr4 494963 501465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0056 84 417 EF-hand Containing Proteins AT4G38810 62.011 2.31e-151 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0056 - - gmx:100808079 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0056 4 494963 501465 Gso4g0056 4 494963 501465 ECH
Gso4g0056 4 494963 501465 Gso6g0051 6 488043 491848 GST