Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0033 ATGGAGGAGCGGACTCGCAGCATTCTGATTTTGATGACCTTGCTTTCCATCTCCATTGCTGGCGGCAATGCAGGTGGCTTGCAGCATCATAAGGGTAGGCATGGTAAGCATGGTCGTCATATGTCTGCTCGTAATGTGACTTACGACGGTAAGTCACTGTTCATTAACGGAAGGCGCGAGATCCTTTTTTCCGGCTCCGTCCATTACACACGAAGCACCCCAGATATGTGGCCTGACATTCTTGACAAAGCAAGGCGCGGAGGCTTGAACGTCATTCAAACTTACGTTTTCTGGAACGCTCACGAGCCAGAGCCCGGCAAGTTCAACTTCCAAGGCAATTATGATCTTGTCAAGTTCATTAGGCTCGTTCAAGCCAAAGGCATGTTTGTCACTCTCAGGGTTGGTCCCTTCATCCAAGCCGAGTGGAACCACGGAGGTCTTCCTTATTGGCTTAGAGAGGTCCCTGGCATCATATTCCGCTCTGACAATGAGCCCTACAAGTTTCACATGAAAGCCTTCGTGTCTAAGATTATACAGATGATGAAGGATGAGAAGCTCTTTGCTCCCCAAGGAGGTCCCATCATCTTGGCTCAAATTGAGAACGAGTACAATCATATCCAACTTGCATACGAAGAGAAGGGAGACAGTTACGTCCAATGGGCTGCCAATATGGCCGTGGCCACCGATATTGGTGTTCCATGGCTCATGTGCAAGCAGAGGGATGCCCCTGATCCCGTCATCAACGCATGCAATGGTAGACACTGTGGTGATACCTTCGCAGGGCCAAACAAACCATACAAACCAGCCATATGGACCGAGAATTGGACTGCTCAGTACAGAGTACATGGAGATCCACCATCCCAGAGATCCGCAGAAGACATCGCATTCTCAGTTGCCCGTTTCTTCTCCAAGAATGGAAATTTGGTCAACTACTATATGTACCATGGTGGAACAAACTTTGGCAGAACAAGCTCTGTGTTTAGCACAACCCGTTATTACGATGAGGCACCTCTTGATGAATACGGTCTGCCCAGAGAACCGAAATGGAGTCACCTGAGGGACGTGCACAAAGCTTTGCTCCTTTGCAGGAGGGCTATCCTTGGTGGCGTTCCCAGTGTCCAAAAGTTGAACCATTTTCACGAGGTTAGAACCTTTGAGAGGGTTGGAACCAACATGTGTGCTGCTTTCATCACTAACAACCACACCATGGAGCCAGCCACCATTAACTTCAGAGGCACAAACTACTTTTTGCCTCCACATTCCATCAGCATCCTCCCCGATTGCAAGACCGTGGTCTTCAACACCCAACAGATTGTTTCACAGCACAATTCAAGGAACTACGAGAGGTCACCCGCAGCCAACAATTTCCACTGGGAGATGTTCAATGAGGCCATTCCAACGGCCAAGAAAATGCCAATCAACCTCCCAGTTCCCGCAGAGCTTTACAGCTTGCTTAAGGACACCACCGACTATGCTTGGTACACCACCAGCTTCGAGTTGAGTCAAGAAGACATGTCAATGAAGCCCGGGGTACTTCCAGTACTTCGTGTTATGAGTCTCGGACATTCAATGGTTGCATTCGTAAACGGAGACATCGTTGGAACTGCTCATGGTACCCATGAAGAAAAATCTTTTGAGTTCCAGACACCTGTATTGCTCAGGGTTGGAACCAACTATATTTCCTTGTTGTCTAGCACTGTTGGACTACCCGACAGCGGAGCTTACATGGAACATAGGTACGCAGGACCCAAGTCCATAAACATCCTTGGTCTCAACAGGGGGACACTAGATCTTACTCGCAATGGGTGGGGTCATCGGGTTGGTCTGAAAGGTGAGGGCAAGAAAGTTTTCAGCGAGGAAGGATCAACAAGTGTAAAGTGGAAACCACTTGGTGCAGTTCCGAGGGCTCTGAGCTGGTACAGGACAAGATTTGGCACCCCAGAGGGAACAGGCCCTGTTGCCATAAGGATGAGTGGTATGGCGAAGGGAATGGTGTGGGTCAACGGTAACAACATTGGTCGCTACTGGATGAGTTACCTCTCTCCACTTGGAAAGCCTACTCAATCAGAGTACCACATCCCAAGATCTTTCCTGAACCCACAAGACAATTTGCTTGTGATTTTTGAAGAGGAGGCCAGAGTTCCAGCACAGGTTGAGATCCTAAATGTGAACAGAGACACAATCTGCAGCGTAGTTGGAGAGAGGGACCCTGCGAACGTGAATTCATGGGTGTCTAGGAGGGGCAATTTCCATCCTGTAGTGAAATCAGTTGGAGCAGCAGCTTCGATGGCGTGTGCAACTGGGAAAAGGATAGTGGCAGTGGAGTTCGCAAGCTTTGGAAACCCCAGTGGTTATTGCGGAGACTTTGCAATGGGAAGCTGCAATGCTGCTGCCAGCAAGCAAATCGTGGAGCGAGAATGCTTAGGGCAAGAAGCTTGCACGCTTGCATTGGACCGTGCGGTGTTCAACAACAATGGCGTGGATGCTTGCCCAGATTTGGTGAAGCAACTTGCAGTCCAAGTGAGGTGTGCTTAG 2535 0.4935 MEERTRSILILMTLLSISIAGGNAGGLQHHKGRHGKHGRHMSARNVTYDGKSLFINGRREILFSGSVHYTRSTPDMWPDILDKARRGGLNVIQTYVFWNAHEPEPGKFNFQGNYDLVKFIRLVQAKGMFVTLRVGPFIQAEWNHGGLPYWLREVPGIIFRSDNEPYKFHMKAFVSKIIQMMKDEKLFAPQGGPIILAQIENEYNHIQLAYEEKGDSYVQWAANMAVATDIGVPWLMCKQRDAPDPVINACNGRHCGDTFAGPNKPYKPAIWTENWTAQYRVHGDPPSQRSAEDIAFSVARFFSKNGNLVNYYMYHGGTNFGRTSSVFSTTRYYDEAPLDEYGLPREPKWSHLRDVHKALLLCRRAILGGVPSVQKLNHFHEVRTFERVGTNMCAAFITNNHTMEPATINFRGTNYFLPPHSISILPDCKTVVFNTQQIVSQHNSRNYERSPAANNFHWEMFNEAIPTAKKMPINLPVPAELYSLLKDTTDYAWYTTSFELSQEDMSMKPGVLPVLRVMSLGHSMVAFVNGDIVGTAHGTHEEKSFEFQTPVLLRVGTNYISLLSSTVGLPDSGAYMEHRYAGPKSINILGLNRGTLDLTRNGWGHRVGLKGEGKKVFSEEGSTSVKWKPLGAVPRALSWYRTRFGTPEGTGPVAIRMSGMAKGMVWVNGNNIGRYWMSYLSPLGKPTQSEYHIPRSFLNPQDNLLVIFEEEARVPAQVEILNVNRDTICSVVGERDPANVNSWVSRRGNFHPVVKSVGAAASMACATGKRIVAVEFASFGNPSGYCGDFAMGSCNAAASKQIVERECLGQEACTLALDRAVFNNNGVDACPDLVKQLAVQVRCA* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0033 844 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 10 840 - -
Gso4g0033 844 Gene3D - 614 732 - -
Gso4g0033 844 Gene3D - 396 582 - -
Gso4g0033 844 Pfam Beta-galactosidase jelly roll domain 638 707 IPR025300 -
Gso4g0033 844 PANTHER BETA-GALACTOSIDASE RELATED 10 840 IPR001944 GO:0004553|GO:0005975
Gso4g0033 844 SUPERFAMILY Galactose-binding domain-like 422 583 IPR008979 -
Gso4g0033 844 Gene3D Glycosidases 43 361 - -
Gso4g0033 844 PRINTS Glycosyl hydrolase family 35 signature 56 73 IPR001944 GO:0004553|GO:0005975
Gso4g0033 844 PRINTS Glycosyl hydrolase family 35 signature 77 95 IPR001944 GO:0004553|GO:0005975
Gso4g0033 844 PRINTS Glycosyl hydrolase family 35 signature 132 151 IPR001944 GO:0004553|GO:0005975
Gso4g0033 844 PRINTS Glycosyl hydrolase family 35 signature 189 204 IPR001944 GO:0004553|GO:0005975
Gso4g0033 844 PRINTS Glycosyl hydrolase family 35 signature 270 285 IPR001944 GO:0004553|GO:0005975
Gso4g0033 844 PRINTS Glycosyl hydrolase family 35 signature 307 322 IPR001944 GO:0004553|GO:0005975
Gso4g0033 844 PRINTS Glycosyl hydrolase family 35 signature 326 342 IPR001944 GO:0004553|GO:0005975
Gso4g0033 844 PRINTS Glycosyl hydrolase family 35 signature 635 649 IPR001944 GO:0004553|GO:0005975
Gso4g0033 844 PRINTS Glycosyl hydrolase family 35 signature 662 678 IPR001944 GO:0004553|GO:0005975
Gso4g0033 844 Pfam Glycosyl hydrolases family 35 52 358 IPR031330 -
Gso4g0033 844 ProSiteProfiles SUEL-type lectin domain profile. 755 844 IPR000922 GO:0030246
Gso4g0033 844 SUPERFAMILY Galactose-binding domain-like 600 749 IPR008979 -
Gso4g0033 844 Pfam Galactose binding lectin domain 764 843 IPR000922 GO:0030246
Gso4g0033 844 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 191 203 IPR019801 GO:0004553|GO:0005975
Gso4g0033 844 SUPERFAMILY (Trans)glycosidases 45 362 IPR017853 -
Gso4g0033 844 Pfam Beta-sandwich domain in beta galactosidase 368 438 IPR041392 -
Gso4g0033 844 Gene3D - 752 844 IPR043159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0033 Gso-Chr4 325619 328670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0033 46 844 Glycoside Hydrolase AT2G16730 57.980 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0033 - - gmx:100791456 1726.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0033 4 325619 328670 Gso4g0033 4 325619 328670 ECH