Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0001 ATGGATACTGGTGGCAATTCTTTACCATCTGCACCTGATGGGGTGAAGAGAAAGGTGTGCTATTTTTATGATCCGGAGGTTGGGAATTACTATTATGGGCAAGGTCACCCAATGAAGCCACATCGCATACGGATGACACATGCTCTTCTAGCCCATTATGGATTGCTACAACACATGCAGGTCCATAAGCCATTTCCTGCTAGAGACAGGGACCTTTGTCGATTTCATGCTGATGATTATGTTGCATTCCTTCGAAGCATAACTCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTTTTTGATGGCCTCTACTCTTTCTGTCAAACATATGCAGGGGGTTCAGTTGGGGGTGCTGTAAAGTTAAATCATGACCAATGTGATATTGCTGTCAACTGGGCTGGTGGGTTGCATCATGCCAAGAAGTGTGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTTGCAATCTTAGAACTTCTCAAACAACATGAGCGTGTTCTATATGTGGACATTGACATCCACCATGGAGACGGTGTGGAGGAAGCTTTCTACACTACTGACAGAGTCATGACTGTTTCTTTCCATAAATTTGGTGACTATTTTCCTGGTACTGGGGATGTACGTGATATTGGATATGGAAAAGGAAAATATTACTCTCTTAATGTTCCACTTGATGATGGCATTGATGATGAGAGTTATCATTTTTTGTTCAAACCAATAATTGGCAAAGTAATGGAAGTGTTCAGGCCTGGTGCAGTAGTTCTCCAGTGCGGTGCTGATTCTTTATCTGGAGACCGATTGGGATGTTTCAATCTTTCAATTAGGGGTCATGCTGAGTGTGTCAAATACATGAGATCATTCAATGTGCCCCTCTTGCTACTAGGTGGTGGTGGCTACACCATTCGGAATGTTGCTCGTTGTTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAACACGAGTATTATGAATATTTTGGTCCAGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAGAATTCCCGTCATTTACTTGAAGAAATTCGATCTAAACTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCTAGTGTCCAATTTCAGGAAAGACCTCCTGATTCTGATCTTGGAGAGGCCGATGAAGATCATGATGATGGAGATGAGCCTTGGGATCCAGATTCTGACATGGACGTTGACGTTGAACGTGAGCTTGTCTCGAGCAAAGTAAAGAAAGAAATTGCTGAACCTCAGCCCAATGATCTGGAGGACCAGAGAAGTGGAGAGCATTTGAGAGACTCTGATACTGCAGTTGCGGAAACCTGCATGAAGGCTCTAGATATTTCTTCTCAGAAAGCTGATGAAGATAATGTGAAAGTAGAACAGAATACTGTGAATGATTTGGCCAAAGAGACGGACCTGAAGGGTTAA 1494 0.4284 MDTGGNSLPSAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVAFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVKYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRHLLEEIRSKLLENLSKLQHAPSVQFQERPPDSDLGEADEDHDDGDEPWDPDSDMDVDVERELVSSKVKKEIAEPQPNDLEDQRSGEHLRDSDTAVAETCMKALDISSQKADEDNVKVEQNTVNDLAKETDLKG* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0001 497 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Gso4g0001 497 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Gso4g0001 497 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Gso4g0001 497 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Gso4g0001 497 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Gso4g0001 497 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Gso4g0001 497 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Gso4g0001 497 PANTHER HISTONE DEACETYLASE 3 490 - -
Gso4g0001 497 Gene3D Histone deacetylase domain 15 388 IPR037138 -
Gso4g0001 497 Pfam Histone deacetylase domain 36 324 IPR023801 -
Gso4g0001 497 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Gso4g0001 497 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Gso4g0001 497 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Gso4g0001 497 MobiDBLite consensus disorder prediction 383 457 - -
Gso4g0001 497 PIRSF HDAC_I_euk 5 491 IPR003084 GO:0004407|GO:0016575
Gso4g0001 497 MobiDBLite consensus disorder prediction 400 420 - -
Gso4g0001 497 MobiDBLite consensus disorder prediction 421 457 - -
Gso4g0001 497 PANTHER HISTONE DEACETYLASE 19 3 490 - -
Gso4g0001 497 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0001 Gso-Chr4 24018 33158 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0001 K06067 - gmx:100795375 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0001 4 24018 33158 Gso4g0001 4 24018 33158 ECH
Gso4g0001 4 24018 33158 Gso6g0001 6 6694 19302 GST