Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1971 ATGTGGAGCTCCAAAACGACATTGATGTTTGGCGTCGCAGCCATTGCTCTGATGATGTTTCTCTCATCTGCTTCAGCGGACGACGTCGTTGCACTCACAGAGGAAACCTTCGAAAACGAGGTTGGCAAGGATCGCGCCGCTCTCGTCGAGTTTTACGCTCCCTGGTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGACTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGGTGGATTGTGATGAACAGAAAAGTGTTTGTAGTAAATATGGGGTATCTGGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAAGTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCCAGATAACTTTGATGAGGTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGGTGCGGTCATTGCAAGGCCCTTGCCCCTATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATGGCCAATGTTGATGCTGACAAGTATAAAGATTTGGCTGAGAAATATGGTGTTAGTGGCTATCCTACACTGAAGTTTTTCCCAAAGAGCAACAAAGCTGGTGAAGATTATAATGGTGGCCGTGATTTGGATGATTTTGTAGCATTCATCAATGAGAAATGTGGCACCTACCGTGATGGGAAGGGACAGCTTACTTCTAAGGCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCTGACAGTAATGAGAAGAAGGCAGTATATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGCAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTATCTACCTTTGCTTGA 1089 0.4435 MWSSKTTLMFGVAAIALMMFLSSASADDVVALTEETFENEVGKDRAALVEFYAPWCGHCKRLAPEYEQLGTTFKKTKSVLIAKVDCDEQKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGARTAEALAAFVNIEAGTNVKIASVPSSVVVLSPDNFDEVVLDETKDVLVEFYAPWCGHCKALAPIYEKVAAAFNLDKDVVMANVDADKYKDLAEKYGVSGYPTLKFFPKSNKAGEDYNGGRDLDDFVAFINEKCGTYRDGKGQLTSKAGIIASLDDLVKEFVSADSNEKKAVYSRLEEEVKKLKGSSARHGDLYLKLAKKGIEKGADYAKNEIQRLERMLEKSISPAKADEFTLKKNILSTFA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1971 362 CDD PDI_a_ERp38 28 130 - -
Gso3g1971 362 ProSitePatterns Thioredoxin family active site. 167 185 IPR017937 -
Gso3g1971 362 CDD ERp29c 270 361 IPR011679 GO:0005783
Gso3g1971 362 Gene3D Glutaredoxin 21 137 - -
Gso3g1971 362 PRINTS Thioredoxin family signature 166 174 - -
Gso3g1971 362 PRINTS Thioredoxin family signature 174 183 - -
Gso3g1971 362 PRINTS Thioredoxin family signature 216 227 - -
Gso3g1971 362 Pfam Endoplasmic reticulum protein ERp29, C-terminal domain 268 361 IPR011679 GO:0005783
Gso3g1971 362 SUPERFAMILY Thioredoxin-like 27 131 IPR036249 -
Gso3g1971 362 Gene3D - 267 362 IPR036356 -
Gso3g1971 362 SUPERFAMILY Thioredoxin-like 144 256 IPR036249 -
Gso3g1971 362 ProSiteProfiles Thioredoxin domain profile. 137 254 IPR013766 -
Gso3g1971 362 PANTHER PROTEIN DISULFIDE ISOMERASE-LIKE 2-1 14 361 - -
Gso3g1971 362 CDD PDI_a_ERp38 153 249 - -
Gso3g1971 362 Pfam Thioredoxin 29 131 IPR013766 -
Gso3g1971 362 Pfam Thioredoxin 147 250 IPR013766 -
Gso3g1971 362 SUPERFAMILY ERP29 C domain-like 267 361 IPR036356 -
Gso3g1971 362 Coils Coil 285 305 - -
Gso3g1971 362 TIGRFAM pdi_dom: protein disulfide-isomerase domain 151 252 IPR005788 GO:0003756
Gso3g1971 362 TIGRFAM pdi_dom: protein disulfide-isomerase domain 32 131 IPR005788 GO:0003756
Gso3g1971 362 PANTHER PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED 14 361 - -
Gso3g1971 362 ProSiteProfiles Thioredoxin domain profile. 8 135 IPR013766 -
Gso3g1971 362 Gene3D Glutaredoxin 138 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1971 Gso-Chr3 45231303 45234836 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1971 K09584 - gmx:100796355 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1931 19 48009146 48013075 Gso3g1971 3 45231303 45234836 GST