Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1959 ATGTCTCTGCGACCTGGTTCTGGTTCTGCTTGGGCGACAAGGAAGAAAAGCTATAAGAGTGGAATTGACCCCCGAGAGATTCGGAGAAGGAGAGAAGAGGACCTCTTCGGCATCAGAAAAAACAAACGCCATGACACTCTCTTCAACAAACGAACACAGACTCATACTACCCATTCCCGCAATACGTTTTTGGAAGCTATTAGTGCCATGGTAGACCACATATGTTCTGAGTTCCCTCCCGCAGAATTGGAGAAAACACGTCACGCTGAAATTCTGTCATCACTAGCTGCTCAATGCCCTTCAATTGATGATGTCATTGAGCAAGGTATTGTCCCTCGCTTTGCGACGTTCTTGTCAAGGGACGATGCACCCCAATTGCAGTTAGGAGCTATATTGATTCTAACCAGTATTGCTTGTGGATCATCCCAACACAAAAGAGTTATCGTTGAACTCGGTCTTGTTCCCTCCTTTGTGAATCTTCTCAGCTCTAGTAGCAATGATGATATCAAAGAAGAGATAGTATGCGCTTTAGGGTTCATTGCCATTGATTCCCCGAGCTATAGGGATCTTGTTCTTAACCACGGTGTTCTTCTACCGTTATTATCTCTGTTGAACCCACTTCCAAGATTGTCTATGGTGAGGGTTACTACATGGACTTTATATAGTTTGGTCCGTGGAAAGCCTCCGGTGAATTTTGAACAGGTAAAGCCTGTCTTGCCTGTCCTTCATCAACTCATCCACCAGACCGATGAAGAAGTTGTAGCAGATGCATGCTTGGCTCTCTCTTACCTTTCAGAAGTCTCAATTGACAAAATTCAAGATATTATTGATGCAGGAGTTTGCCCAAAACTTGTGGAGCTTCTGCAGTGTCAATCAGATAAAGTTGTTTTACCAGCGCTTCGGACTCTAGGAAATATTGTTACTGGTGATGATGCTCAGACACAGGTTGTAATTGATAACGGAGTGCTCCCGTGTCTTTGCCAAGTTCTTACGCGTGAGTACAAAAAAATGATCCATAAAGAAGCTTGTTGGACAATCTCAAATATCGCAGGTGGGAATAGAGCTCAAATACAGGCTGTCATTAAGGCCAATATTATTCCTCCTCTTATTCAAATTCTTCAACATGCTGAGTTCGACGTCAAGAAGGAGTCTGCCTGGGCGATCTTGAGTATCACTGTTGGAGGATCTCGTGACCATATCAGGTTCGTGGCGGCTCAAGGTTGCATTAAGGGACTATGTGATCTGTTGAGCTGTCCAGACCCAGAGGTTGTGTCAATTTGTCTGGAGGGGCTGGAGAACATTTTGTGGGTGGGAGAAGCTGACAAGGAAGTGGGACTGCATGATAGTGTCAATATTTATGCTCAAAGAGTTGAGGAATGTGAAGGATTGGATAAGATTCAAAAATTGCTGGTACATGACAACGATGAGATTTTTGAGATGGCATTGAGGATTTTGAAGAAATTTTGGCCAGTGTTAGAGAATGATTTGGAAGCTATTTTGGATCTTCATATTGAGCCGGATGGTGAGGAATATATTTTGGATATTCAGATTGCAAGATAG 1560 0.434 MSLRPGSGSAWATRKKSYKSGIDPREIRRRREEDLFGIRKNKRHDTLFNKRTQTHTTHSRNTFLEAISAMVDHICSEFPPAELEKTRHAEILSSLAAQCPSIDDVIEQGIVPRFATFLSRDDAPQLQLGAILILTSIACGSSQHKRVIVELGLVPSFVNLLSSSSNDDIKEEIVCALGFIAIDSPSYRDLVLNHGVLLPLLSLLNPLPRLSMVRVTTWTLYSLVRGKPPVNFEQVKPVLPVLHQLIHQTDEEVVADACLALSYLSEVSIDKIQDIIDAGVCPKLVELLQCQSDKVVLPALRTLGNIVTGDDAQTQVVIDNGVLPCLCQVLTREYKKMIHKEACWTISNIAGGNRAQIQAVIKANIIPPLIQILQHAEFDVKKESAWAILSITVGGSRDHIRFVAAQGCIKGLCDLLSCPDPEVVSICLEGLENILWVGEADKEVGLHDSVNIYAQRVEECEGLDKIQKLLVHDNDEIFEMALRILKKFWPVLENDLEAILDLHIEPDGEEYILDIQIAR* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1959 519 PANTHER IMPORTIN ALPHA 3 495 - -
Gso3g1959 519 Pfam Atypical Arm repeat 451 495 IPR032413 -
Gso3g1959 519 SMART arm_5 184 225 IPR000225 GO:0005515
Gso3g1959 519 SMART arm_5 268 308 IPR000225 GO:0005515
Gso3g1959 519 SMART arm_5 396 436 IPR000225 GO:0005515
Gso3g1959 519 SMART arm_5 353 393 IPR000225 GO:0005515
Gso3g1959 519 SMART arm_5 98 139 IPR000225 GO:0005515
Gso3g1959 519 SMART arm_5 227 266 IPR000225 GO:0005515
Gso3g1959 519 SMART arm_5 141 182 IPR000225 GO:0005515
Gso3g1959 519 SMART arm_5 310 351 IPR000225 GO:0005515
Gso3g1959 519 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 279 321 IPR000225 GO:0005515
Gso3g1959 519 Pfam Armadillo/beta-catenin-like repeat 310 350 IPR000225 GO:0005515
Gso3g1959 519 Pfam Armadillo/beta-catenin-like repeat 397 434 IPR000225 GO:0005515
Gso3g1959 519 Pfam Armadillo/beta-catenin-like repeat 354 392 IPR000225 GO:0005515
Gso3g1959 519 Pfam Armadillo/beta-catenin-like repeat 141 178 IPR000225 GO:0005515
Gso3g1959 519 Pfam Armadillo/beta-catenin-like repeat 271 307 IPR000225 GO:0005515
Gso3g1959 519 Pfam Importin beta binding domain 14 83 IPR002652 GO:0006606|GO:0061608
Gso3g1959 519 Gene3D - 65 489 IPR011989 -
Gso3g1959 519 SUPERFAMILY ARM repeat 15 493 IPR016024 -
Gso3g1959 519 MobiDBLite consensus disorder prediction 1 24 - -
Gso3g1959 519 Gene3D - 12 52 IPR036975 GO:0006606
Gso3g1959 519 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Gso3g1959 519 PIRSF Importin_alpha 7 514 IPR024931 GO:0005737|GO:0006606|GO:0061608
Gso3g1959 519 PANTHER IMPORTIN SUBUNIT ALPHA-4 3 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1959 Gso-Chr3 45123690 45126780 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1959 K15042 - gmx:100813229 984.171