Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1954 ATGATCAGTGGTGTCTCAAGGACGAGGAAACTAAGGTACTTTGATTTAGAGAGACAAAGAGAGCGAAAGATGTTGCAGTGCATTTTTCTTCTGTCAGATTCCGGAGAGGTAATGCTAGAGAAACAGCTTAGTGGGCACCGCGTAGATCGCTCCATATGTGCCTGGTTCTGGGACCAAGCCATTTCTCAACCTGATTCCTTCAAGCAACAACCAGTTATTGCTTCTCCTACCCATTATCTATTCCAAGTTTTTCGCGAGGGAATCACCTTTTTGGCCTGCACTCAAGTCGAAATGCCGCCATTGATGGCCATTGAGTTCCTTTGTAGGGTAGCTGATGTTCTCAATGATTATCTTGGGGGGTTGAATGAAGACTTGATCAAAGACAACTTTATCATTGTATATGAGCTGCTGGATGAGATGATAGACAATGGCTTCCCTCTAACTACGGAACCTAATATCCTGCAAGAGATGATAGCTCCACCGAATATTGTTAGCAAAGTCTTGAGTGTTGTGACTGGCAGCAGCTCCAATGTGAGTGACACCCTTCCAGGTGCTACTGCGTCTCTTGTTCCCTGGAGAACGGCAGACACAAAGTATGCCAACAATGAAGTTTATGTAGATCTTGTTGAAGAAATGGATGCAACAATAAACAGGGATGGAGTTCTGGTGAAATGTGAGATCAATGGTGAGGTTCAAGTGAATTCCCATATCACAGGTCTTCCTGATTTGACTCTTTCATTTGCAAATCCTTCAATCCTTGATGATGTGAGGTTCCATCCCTGTGTTAGATATCGGCCCTGGGAATCCAATCAAATTCTTTCATTCGTGCCTCCTGATGGACGATTTAAGCTTATGAGTTACAGAGTTGGAAAATTGAAGAACACCCCGATATATGTTAAGCCACAATTCACTTCAGATGGTGGAAGATGCCGTGTTAGTGTATTGGTTGGCATAAGAAATGATCCTGGAAAGACAATTGATAGTGTTACTGTGCAGTTTCAACTTCCTTCTTGCATCTTATCAGCTGATCTGAGTTCAAATTATGGAATAGTAAACATCCTTGCTAACAAGATATGCTCTTGGTCCATTGGTCGGATCCCAAAGGATAAGGCCCCTTCAATGTCGGGAACATTGGTGCTGGAGACTGGATTGGAGCGTCTTCATGTCTTTCCCACATTTCAAGTGGGTTTTAGGATTATGGGTGTTGCCCTCTCTGGTCTGCAAATAGATAAACTAGATCTAAAGACCGTACCTTACCGTTTTTATAAAGGTTTTCGAGCTCTTACTCGGGCAGGGGAATTTGAAGTCAGGTCATAA 1317 0.4313 MISGVSRTRKLRYFDLERQRERKMLQCIFLLSDSGEVMLEKQLSGHRVDRSICAWFWDQAISQPDSFKQQPVIASPTHYLFQVFREGITFLACTQVEMPPLMAIEFLCRVADVLNDYLGGLNEDLIKDNFIIVYELLDEMIDNGFPLTTEPNILQEMIAPPNIVSKVLSVVTGSSSNVSDTLPGATASLVPWRTADTKYANNEVYVDLVEEMDATINRDGVLVKCEINGEVQVNSHITGLPDLTLSFANPSILDDVRFHPCVRYRPWESNQILSFVPPDGRFKLMSYRVGKLKNTPIYVKPQFTSDGGRCRVSVLVGIRNDPGKTIDSVTVQFQLPSCILSADLSSNYGIVNILANKICSWSIGRIPKDKAPSMSGTLVLETGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1954 438 Gene3D Mu homology domain, subdomain B 190 433 - -
Gso3g1954 438 Gene3D - 24 165 - -
Gso3g1954 438 CDD AP-3_Mu3_Cterm 190 437 - -
Gso3g1954 438 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 190 210 IPR018240 GO:0006886|GO:0016192|GO:0030131
Gso3g1954 438 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 190 437 IPR036168 -
Gso3g1954 438 Gene3D Mu homology domain, subdomain B 295 436 - -
Gso3g1954 438 Pfam Adaptor complexes medium subunit family 190 437 IPR028565 -
Gso3g1954 438 PANTHER CARMINE, ISOFORM A 30 437 - -
Gso3g1954 438 CDD AP3_Mu_N 26 165 - -
Gso3g1954 438 PIRSF AP_complex_mu 24 438 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gso3g1954 438 ProSiteProfiles Mu homology domain (MHD) profile. 201 437 IPR028565 -
Gso3g1954 438 PANTHER AP COMPLEX SUBUNIT MU 30 437 - -
Gso3g1954 438 SUPERFAMILY SNARE-like 24 165 IPR011012 -
Gso3g1954 438 PRINTS Clathrin coat assembly protein signature 123 150 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gso3g1954 438 PRINTS Clathrin coat assembly protein signature 253 280 IPR001392 GO:0006886|GO:0016192|GO:0030131
Gso3g1954 438 PRINTS Clathrin coat assembly protein signature 360 371 IPR001392 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1954 Gso-Chr3 45102356 45105662 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1954 K12398 - gmx:100791605 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1954 3 45102356 45105662 Gso10g1331 10 39633183 39635914 PCT
Gso10g1331 10 39633183 39635914 Gso3g1954 3 45102356 45105662 PCT