Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1943 ATGGGGTTTCAAAACTTGGTATTGATGATTTTTATGATGACATTGGTTATTTGTCAATATGGGAATTGCAAGGATATAGTCAATCCTCATCATCACTTACACAAAAAAAACGTTACCAAAATACCTAATGATAATGGTTTCATTCAACGAAGTGATACCCATTTTCTTCTAAATGAAAAGTCACAATACTTCAACGGATTCAATGCCTATTGGTTAATGACTATGGCATCTGATCCGTCTACAATTTCTAAGGTCACTACAACTTTTCAAGAAGCATCCCAACACGGTTTGAACGTAGCAAGAACCTGGGCATTCAATGATGGAGGTTACAAAGCCCTTCAAATTTCTCCCGGTTATTATGATGAGAATGTTTTTAAGGGATTGGATTCTGTGATATCACAAGCAGGAAAGAATGGGGTATGGCTGATCCTAAGCCTAATAAATAATTGGAAAGATGGTGGTGGAAAAAATCAATATGTTCAATGGGCAAAGGAACATGGTCAAAAAGTAAACAACGAGGATGACTTCTTCTCACACCCCGTCATTAAGCAATACTACAAAAATCACGTCAAGACTATATTAACTAGAAAGAATACTATAACTGGATTAACATATAAAGATGATCCAACTATTTTTGCATGGGAGCTTATGAACGAACCTCGTTGTTCAGAGCTATCTGGAAAACAAATTCAGGATTGGGTGAGGGAGATGGCTGCCTATGTGAAGTCCATTGATAGCAATCACTTACTCCAAATAGGGCTTGAAGGATTTTATGGTGAATCGATGCCAGAAAGGAAGCAGTTCAATCCTGGATATCAAATAGGAACCGATTTCATTTCTAACAATCAAGTTCCGGAAATCGATTTTACCACCATCCATCTATACCCTCAGTGGATGTCTAGGTTTAATGAAACAGCCCAAGATGTCTTTATTAACAATTGGGTCCAAGTCCATATTCAAGACGCAAATGATGTTTTACGGAAACCCATTCTTCTTAGCGAGTTTGGGTTATCTTCAAAGATTTCAGGATATGGCGTGGAGAAAAGGAATAGTTTGTTTGAGAAACTATACAATTTGATATACAAGAGTGCAAGTAACAGGGGGTCATGTGCAGGAGGGCTTTTTTGGCAACTACTGGCCAAAGGAATGGATGACTTTCGTGATGGCTATGAAGTCGTTTTTGAAGAGACTCCTTCAACTACCAATATCATTACTAAACAATCTAAGAAGATGTCAAGTCTTGCATAA 1248 0.3758 MGFQNLVLMIFMMTLVICQYGNCKDIVNPHHHLHKKNVTKIPNDNGFIQRSDTHFLLNEKSQYFNGFNAYWLMTMASDPSTISKVTTTFQEASQHGLNVARTWAFNDGGYKALQISPGYYDENVFKGLDSVISQAGKNGVWLILSLINNWKDGGGKNQYVQWAKEHGQKVNNEDDFFSHPVIKQYYKNHVKTILTRKNTITGLTYKDDPTIFAWELMNEPRCSELSGKQIQDWVREMAAYVKSIDSNHLLQIGLEGFYGESMPERKQFNPGYQIGTDFISNNQVPEIDFTTIHLYPQWMSRFNETAQDVFINNWVQVHIQDANDVLRKPILLSEFGLSSKISGYGVEKRNSLFEKLYNLIYKSASNRGSCAGGLFWQLLAKGMDDFRDGYEVVFEETPSTTNIITKQSKKMSSLA* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1943 415 Pfam Cellulase (glycosyl hydrolase family 5) 66 340 IPR001547 GO:0004553|GO:0071704
Gso3g1943 415 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 9 414 - -
Gso3g1943 415 PANTHER - 9 414 IPR045053 GO:0004553
Gso3g1943 415 SUPERFAMILY (Trans)glycosidases 46 393 IPR017853 -
Gso3g1943 415 Gene3D Glycosidases 43 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1943 Gso-Chr3 44999552 45002955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1943 46 412 Glycoside Hydrolase AT5G66460 54.743 2.43e-149 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1943 K19355 - gmx:100788081 862.448