Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1932 ATGATTATTATGAAACTTGTCTTGCAGTTGCAGCTATTCACAAGTGGTGTTCCAAAATTCCACCAATTCTCCTCAGTTCCCGACCTCAAGCATCTCCTCAACAACGCCGCAAAGTTGAAGAGCCTTAAACACGCGACCCAAATCCACTCCCAACTCGTAACAACCAATAATCACGCGTCCCTCGCCAACATCAACACCCTCCTCCTCTTGTATGCAAAATGCGGCTCCATCCACCACACGCTCCTCTTGTTCAACACATACCCTCACCCCTCAACCAACGTCGTCACGTGGACCACACTCATAAACCAACTCTCCCGTTCCAACAAACCCTTCCAAGCCTTGACATTTTTCAACCGCATGAGAACCACTGGCATATACCCAAACCACTTCACCTTCTCAGCGATCTTACCCGCGTGCGCGCACGCAGCGCTCCTTTCAGAGGGCCAACAAATCCACGCATTGATACACAAACACTGCTTCCTAAATGACCCTTTTGTTGCCACCGCGTTGTTAGACATGTACGCTAAGTGTGGCTCCATGTTGTTGGCGGAGAACGTGTTCGACGAAATGCCCCATAGAAACCTCGTTTCATGGAACTCCATGATTGTCGGGTTTGTTAAGAACAAGTTGTACGGTCGTGCCATTGGGGTTTTCAGGGAGGTTCTTTCACTTGGCCCCGACCAAGTTAGTATCTCGAGCGTATTGAGTGCTTGTGCTGGATTGGTTGAGTTAGATTTTGGGAAACAAGTCCATGGGAGCATTGTTAAGCGTGGTTTGGTGGGGTTGGTTTATGTCAAGAACTCGCTGGTGGACATGTATTGCAAATGCGGGCTGTTTGAGGATGCAACCAAGTTGTTCTGTGGTGGTGGAGATAGAGATGTTGTAACGTGGAATGTAATGATCATGGGATGCTTTCATTGCCAAAATTTTGAACAAGCTTGCACCTATTTCCAAGCTATGATAAGGGAAGGCGTAGAACCCGACGAGGCTTCATACTCTTCTCTTTTTCATGCTTCTGCAAGTATTGCAGCATTAACACAGGGGACCATGATCCATAGTCATGTTTTAAAAACCGGGCATGTGAAAAACTCTCGTATTTCAAGTTCGTTGGTGACTATGTATGGGAAATGTGGAAGCATGTTAGACGCTTATCAAGTTTTTCGAGAAACTAAGGAACATAATGTGGTTTGTTGGACGGCTATGATAACAGTTTTCCATCAACATGGTTGCGCAAATGAGGCGATTAAATTGTTTGAGGAGATGCTCAATGAAGGGGTTGTGCCGGAATACATTACTTTTGTTTCCGTGTTGTCGGCTTGCAGCCATACGGGGAAGATTGATGATGGTTTTAAGTACTTCAATTCCATGGCTAATGTTCATAACATTAAACCCGGGCTTGAGCATTATGCTTGCATGGTTGACTTGCTTGGTCGTGTTGGTCGATTGGAGGAAGCATGTAGGTTCATTGAATCCATGCCATTCGAGCCTGACTCGTTGGTTTGGGGGGCTTTGCTTGGGGCATGTGGAAAACATGCCAATGTTGAAATGGGAAGAGAGGTCGCAGAGAGACTTTTCAAGTTGGAACCGGATAATCCAGGAAACTATATGCTGCTTTCGAATATCTATATAAGACACGGGATGTTGGAAGAAGCTGATGAGGTGAGAAGATTGATGGGGATCAATGGGGTGAGGAAAGAGAGTGGGTGTAGCTGGATTGATGTTAAGAACAGGACCTTTGTTTTCAATGCGAATGATAGGTCACATTCAAGGACACAAGAGATTTATGGAATGCTGCAAAAGTTGAAGGAGTTGATAAAGAGAAGAGGGTATGTGGCTGAGACCCAGTTTGCAACTAACAGTGTGGAAGGCTCTGAAGAGCAGAGTTTGTGGTGTCACAGTGAGAAATTGGCTCTTGCATTTGGTCTTCTGGTCCTCCCACCTGGGTCTCCGGTTAGGATAAAGAAGAATTTGAGGACCTGTGGTGATTGCCATACTGTTATGAAGTTTGCTTCTGAGATTTTTCAGAGAGAAATTATTGTTAGAGATATCAATAGGTTTCATCGATTCACAAATGGATCGTGCTCTTGTATGGATTATTGGTGA 2103 0.4522 MIIMKLVLQLQLFTSGVPKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFHCQNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEGSEEQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1932 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Gso3g1932 700 Pfam PPR repeat family 93 140 IPR002885 -
Gso3g1932 700 Pfam PPR repeat family 292 338 IPR002885 -
Gso3g1932 700 Pfam PPR repeat family 394 441 IPR002885 -
Gso3g1932 700 Pfam DYW family of nucleic acid deaminases 609 700 IPR032867 GO:0008270
Gso3g1932 700 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 693 - -
Gso3g1932 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Gso3g1932 700 Gene3D Tetratricopeptide repeat domain 101 243 IPR011990 GO:0005515
Gso3g1932 700 Gene3D Tetratricopeptide repeat domain 368 575 IPR011990 GO:0005515
Gso3g1932 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Gso3g1932 700 TIGRFAM PPR: pentatricopeptide repeat domain 196 223 IPR002885 -
Gso3g1932 700 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Gso3g1932 700 TIGRFAM PPR: pentatricopeptide repeat domain 95 128 IPR002885 -
Gso3g1932 700 TIGRFAM PPR: pentatricopeptide repeat domain 295 329 IPR002885 -
Gso3g1932 700 Pfam E motif 511 573 IPR046848 -
Gso3g1932 700 PANTHER OS07G0578800 PROTEIN-RELATED 15 693 IPR045215 GO:0003723|GO:0009451
Gso3g1932 700 SUPERFAMILY TPR-like 198 553 IPR011990 GO:0005515
Gso3g1932 700 Pfam PPR repeat 196 225 IPR002885 -
Gso3g1932 700 Pfam PPR repeat 469 492 IPR002885 -
Gso3g1932 700 Pfam PPR repeat 168 194 IPR002885 -
Gso3g1932 700 Pfam PPR repeat 267 287 IPR002885 -
Gso3g1932 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Gso3g1932 700 Gene3D Tetratricopeptide repeat domain 244 347 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1932 Gso-Chr3 44861794 44864010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1932 93 700 Glycoside Hydrolase AT3G49170 40.645 7.73e-162 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1932 - - gmx:100808394 1409.82