LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1916	ATGATGGTGGCAAGTGAGCTACAAGGATTTTCCATGTCCCTGGGTTCAAAGAAGCCATCCTTTTACCGTGACATGAATCTGTCTTCCTCATTCACTGGTAGCAGAGTGAACTTACTTCATTCAAAGAACGTAGCATCTGGTTTTCCTCAAGGAAAATTCTTTAGTGTTACGCAGAGAAATACAACCAGAAGATTTTTGGCTACTTCTACTCTTGCAGATGTTGCAAATGACTTTATGGCCCTTCAATCACCAATACTTACAGGAAGAGAAGCCAGCCCAAAGACTGTTGCATCGATCATATTAGGTGGTGGAGCTGGAACTCGTCTATTCCCCCTTACTCAAAGAAGGGCTAAACCTGCTGTGCCATTTGGAGGATGCTATAGGCTGGTGGACATACCAATGAGTAATTGTATTAACAGTGGAATTAACAAAATCTACGTCCTTACACAATTTAATTCTCAGTCCCTAAATCGCCACATTGCTCAAACATATAATTTGGGAGGCTGCATCAACTTTGGAGGTGGTTTTGTTGAGGTATTGGCAGCAACTCAGACACCTGGGGAATCAGGAAAGAAGTGGTTTCAGGGTACAGCGGATGCTGTGAGACAATTTCTTTGGTTGTTTGAGGATGCTGATCATAAAAATATAGAAAACATTCTGATATTGTGTGGTGATCAGCTATATCGAATGGATTACATGGAAATTGTACAGAAGCACATTAATTCATGTGCTGATATATCAGTATCTTGTCTCCCAGTGGATGGCAGTCGGGCTTCTGATTTTGGATTAGTGAAGGTTGACGAAAGAGGACAGATACGCCAGTTCCTTGAAAAACCCAAGGGCGAATTGTTAAGATCTATGCATGTAGATACAAGTATTTTTGGACTATCAGCTCAAGAAGCAAGGAAATTTCCATACATTGCATCAATGGGTATATATGTGTTTAAAATAGATGTTCTACGAAAAGTTCTCAGGGGCTGTTATCCTAACGCAAATGATTTTGGATCTGAGGTCATTCCAATGGCTGCAAAAGATTTTAATGTCCAGGCATGTCTTTTCAATGGTTATTGGGAAGATATTGGGACTATAAAATCTTTCTTTGATGCGAACTTGGCTCTTATGGACCAGCGGCCCAAGTTTCAGTTGTATGACCAGTCCAAGCCTATTTTTACTTGTCCTCGGTTCCTACCACCAACTAAAATGGAGAAGTGTGAGGTAATTAACTCTTTGATTTCAGATGGTTGCTTTTTAAAAGAGTGCACAGTTGAACATTCCATTGTGGGAATCCGATCAAGACTTGATTCAGGAGTGCAGCTAAAGGATACCATGATAATGGGTGCTGACTATTACCAAACAGAGGCTGAAATAGCTTCTCTTTTAGCAGCGGGAAATGTTCCAATAGGCATTGGAAAAAATACCAAAATTGTGAATTGTATAATTGACAAAAACGCAAGAATTGGAAACAGCGTAATTATTGCAAACAAAGACAATGTGCAGGAAGCAGACAAACCAACAGATGGGTTTTATATTCGATCAGGAATCACTGTGGTGTTAAAAGACTCTGTAATAAGCAATGATACAATCATTTAA	1590	0.3981	MMVASELQGFSMSLGSKKPSFYRDMNLSSSFTGSRVNLLHSKNVASGFPQGKFFSVTQRNTTRRFLATSTLADVANDFMALQSPILTGREASPKTVASIILGGGAGTRLFPLTQRRAKPAVPFGGCYRLVDIPMSNCINSGINKIYVLTQFNSQSLNRHIAQTYNLGGCINFGGGFVEVLAATQTPGESGKKWFQGTADAVRQFLWLFEDADHKNIENILILCGDQLYRMDYMEIVQKHINSCADISVSCLPVDGSRASDFGLVKVDERGQIRQFLEKPKGELLRSMHVDTSIFGLSAQEARKFPYIASMGIYVFKIDVLRKVLRGCYPNANDFGSEVIPMAAKDFNVQACLFNGYWEDIGTIKSFFDANLALMDQRPKFQLYDQSKPIFTCPRFLPPTKMEKCEVINSLISDGCFLKECTVEHSIVGIRSRLDSGVQLKDTMIMGADYYQTEAEIASLLAAGNVPIGIGKNTKIVNCIIDKNARIGNSVIIANKDNVQEADKPTDGFYIRSGITVVLKDSVISNDTII*	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g1916	529	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	102	121	IPR005836	GO:0005978\|GO:0008878
	Gso3g1916	529	Gene3D	Hexapeptide repeat proteins	395	529	-	-
	Gso3g1916	529	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 4, CHLOROPLASTIC/AMYLOPLASTIC	2	529	-	-
	Gso3g1916	529	SUPERFAMILY	Trimeric LpxA-like enzymes	393	529	IPR011004	-
	Gso3g1916	529	CDD	LbH_G1P_AT_C	397	523	-	-
	Gso3g1916	529	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	85	394	IPR029044	-
	Gso3g1916	529	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	193	201	IPR005836	GO:0005978\|GO:0008878
	Gso3g1916	529	Pfam	Nucleotidyl transferase	98	374	IPR005835	GO:0009058\|GO:0016779
	Gso3g1916	529	TIGRFAM	glgC: glucose-1-phosphate adenylyltransferase	97	493	IPR011831	GO:0005978\|GO:0008878
	Gso3g1916	529	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	2	529	IPR011831	GO:0005978\|GO:0008878
	Gso3g1916	529	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	95	490	IPR029044	-
	Gso3g1916	529	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	308	318	IPR005836	GO:0005978\|GO:0008878
	Gso3g1916	529	CDD	ADP_Glucose_PP	99	360	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1916	Gso-Chr3	44705432	44711606	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g1916	K00975		-	gmx:100805739	1059.28

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1881	19	47528762	47534455	Gso3g1916	3	44705432	44711606	GST