Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1901 ATGGCTAACCCAACACAACCTAATGTTGGGTTCACCCCTGAGAGAGAGAGTTCAAACCCTGAGAAGAGTCCAATTCCGCCCCCTCCAAGTTTTGTAGCCTCATCACCCGGTTTTCCTCCACCAAAATTGCATTTACAGCAAGATCAAGCCTCTTCCCGTTCCGTTAAAACCCCAAACGTTTTATCACCAGCCAATGGGGTTACCACTGGCAGTCCTGTTCCTCACTTGAGCACCCCTCCTGGACCACCTGTTTTTACTTCGCCGGTCCGTCCAGCTGCTGTTCCTTTTCGCACATCACCTGCATTGCCTCAGCCACTTGCATTTTCTCCAGGCTCTTCTTTGCCAACATCATCATCGCCGCTGCAATTTTCAAATGGAACATTTGAGTCACAGCACCAAGTTTCTGATAGTATAGAGGACCATGTTCCCTTGGGAGAGTCATCCTTTGTTCTTTTTTCAGCTCATAAGGTATTGAAACAGAAGAAACAAGCTAATGTACCCAGTTTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTTTCAGTGGGCCCTCAGGTAATACAGCGTGATCCTCATCGCTGCCAAAGCTGTGGTGCTTATGCAAATATATATTGCAACATATTGCTTGGATCAGGCCAGTGGCAGTGTGTTATATGTCGGAAACTGAATGGAAGTGAGGGGGAGTACATTGCGCATAGCAAGGAAGATCTTCACAGATTTCCGGAATTATCTTCACCTATGTTTGACTATGTTCAAACTGGGAACAAGAGACCTGGTTTTGTTCCAGTTTCTGATTCTAGAATGTCTGCCCCAATTGTTCTTGTTATAGATGAATGTTTAGATGAACCACACCTACACCATCTACAGAGTTCTTTGCATGCTTTTGTTGATTCTCTCCCGCCAACAACGAGATTAGGAATTATACTATATGGTCGTACTGTATCAGTGTATGATCTTTCTGAAGAGGCTATGGCATCTGCTGACGTGCTTCCTGGGGACAAATCACCAAGTCAAGAATCTTTGAAAGCATTGATTTATGGTACTGGTATATACTTGTCACCAATGCATGCTTCGCTGGCTGTTGCACATTCCATATTTTCATCATTGAGGGCATATAAGTTGAATGTACCAGAAGCTTCTCGTGATCGGTGCCTAGGAACTGCTGTTGAGGTTGCTCTTGCTATAATTCAGGGCCCATCTGCTGATCTGTCCCGGGGGTTGGTCAAAAGGTCAGGGGGAAATAGTAGAATTATTGTCTGTGCTGGCGGACCGAACACTTATGGGCCTGGATCTGTTCCTCATTCTTTTAGTCACCCTAATTATCCTTACATGGAAAAGACAGGAATTAAATGGATGGAGAATCTTGGTCATGAGGCTCATCGACACAATACTATAATTGATATTTTATGTGCTGGAACATGCCCTGTAAGAGTTCCTATCTTACATCCTCTTGCAAAAACATCAGGTGGAGTTTTGGTTCTGCATGATGATTTTGGGGAAGCCTTTGGTGTTAATTTGCAAAGGGCATCTGCCAGATCAGCAGGCTCTCATGGTTTGTTAGAATTGCGCACGTCAGATGATATTCTCATTACTCAAGTTGTTGGTCCTGGGGAAGGTTCACGTGTAGATACCCATGAAACATTTAAAAATGACACTGCTCTTTATATTCAAATGCTAAGTGTTGAGGAAACACAAAGTTTCTCTCTCTCCATGGAAACCGAAGGAGATATCAAAAGTGATTTTGTCTTTTTCCAATTTGCAATTCAGTATTCAAATGTGTATCAAGCTGATGTGTCGAGGGTCATTACTGTTAGACTGGCAACGGTAGATAGTATTTCTGCGTATCTTGAGAGTGTTCAGGATGAAGTGGCCGCTGTACTCATTGCTAAAAGAACCCTGTTACGAGCAAAAAACCATTCTGATGCAATTGATATGCGAGCAACAGTAGATGAAAGAATCAAGGACATTGCTCTAAAATTTGGCTCCCAATTACCTAAATCAAAACTTCATAGCTTCCCAAAGGAGCTTTCTCTCCTACCAGAGCTCCTTTTCCATCTCAGGAGAGGACCACTATTGGGAAGTATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAACTTGTTTCTGAATGCATCCTTTGATCTATCACTCAGAATGGTAGCTCCTCGTTGTCTAATGCACAGGGAGGGGGGAACTTTTGAGGAGCTACCGGCGTATGATCTTGCTATGCAGTCTGATGCTGCTGTTGTACTCGACCATGGCACTGATGTCTTCATTTGGTTGGGTGCTGAACTTGCAGCTGATGAAGGAAGAAGTGCTGCTGCTCTAGCTGCATGTAGGACATTGGCTGAAGAGCTGACTGAGTACCGATTTCCAGCACCTCGAATCCTTGCATTTAAGGAGGGTAGCTCCCAGGCTCGATACTTTGTCTCTCGTCTCATTCCAGCTCACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTTCCACAACTGAGGTCGTTGACATCAGAACAACGAACAAAGCTGAAAGCCAGTTTTGTTCACTTCGATGATCCTAGTTTCTGTGAATGGATGCGAAGTTTGAAAGTGGTGCCACCACAACCAAGTTGA 2616 0.445 MANPTQPNVGFTPERESSNPEKSPIPPPPSFVASSPGFPPPKLHLQQDQASSRSVKTPNVLSPANGVTTGSPVPHLSTPPGPPVFTSPVRPAAVPFRTSPALPQPLAFSPGSSLPTSSSPLQFSNGTFESQHQVSDSIEDHVPLGESSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSVGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSEGEYIAHSKEDLHRFPELSSPMFDYVQTGNKRPGFVPVSDSRMSAPIVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRLGIILYGRTVSVYDLSEEAMASADVLPGDKSPSQESLKALIYGTGIYLSPMHASLAVAHSIFSSLRAYKLNVPEASRDRCLGTAVEVALAIIQGPSADLSRGLVKRSGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYPYMEKTGIKWMENLGHEAHRHNTIIDILCAGTCPVRVPILHPLAKTSGGVLVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEGSRVDTHETFKNDTALYIQMLSVEETQSFSLSMETEGDIKSDFVFFQFAIQYSNVYQADVSRVITVRLATVDSISAYLESVQDEVAAVLIAKRTLLRAKNHSDAIDMRATVDERIKDIALKFGSQLPKSKLHSFPKELSLLPELLFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTEYRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTSEQRTKLKASFVHFDDPSFCEWMRSLKVVPPQPS* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1901 871 MobiDBLite consensus disorder prediction 45 74 - -
Gso3g1901 871 Pfam Sec23/Sec24 beta-sandwich domain 518 609 IPR012990 -
Gso3g1901 871 MobiDBLite consensus disorder prediction 20 36 - -
Gso3g1901 871 SUPERFAMILY Zn-finger domain of Sec23/24 186 255 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gso3g1901 871 Gene3D Sec23/Sec24 helical domain 610 730 - -
Gso3g1901 871 Pfam Sec23/Sec24 helical domain 623 719 IPR006900 GO:0006886|GO:0006888|GO:0030127
Gso3g1901 871 SUPERFAMILY vWA-like 273 505 IPR036465 -
Gso3g1901 871 SUPERFAMILY Helical domain of Sec23/24 622 722 IPR036175 GO:0006886|GO:0006888|GO:0030127
Gso3g1901 871 Gene3D - 180 245 - -
Gso3g1901 871 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 58 871 - -
Gso3g1901 871 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 58 871 IPR037364 -
Gso3g1901 871 SUPERFAMILY beta-sandwich domain of Sec23/24 39 620 - -
Gso3g1901 871 MobiDBLite consensus disorder prediction 1 19 - -
Gso3g1901 871 Gene3D Severin 738 833 IPR029006 -
Gso3g1901 871 Gene3D von Willebrand factor, type A domain 272 517 IPR036465 -
Gso3g1901 871 Pfam Sec23/Sec24 trunk domain 274 500 IPR006896 GO:0006886|GO:0006888|GO:0030127
Gso3g1901 871 MobiDBLite consensus disorder prediction 75 89 - -
Gso3g1901 871 CDD gelsolin_like 724 815 - -
Gso3g1901 871 Pfam Sec23/Sec24 zinc finger 192 230 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gso3g1901 871 MobiDBLite consensus disorder prediction 105 133 - -
Gso3g1901 871 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 724 864 IPR036180 -
Gso3g1901 871 MobiDBLite consensus disorder prediction 1 135 - -
Gso3g1901 871 CDD trunk_domain 266 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1901 Gso-Chr3 44540090 44545205 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1901 - - gmx:100804134 1681.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1864 19 47316357 47321632 Gso3g1901 3 44540090 44545205 GST