Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1896 ATGAGATTTCACGGTAACTTTATTATTTGCCGTTATCTTTCTCGGTTGCGAAATCAATTCAATTCAAACTTCGAATTCCCACTCCCGAATTTCCGGCATCGAGCTCCATTCTTCCTCCGTTCTTACTCTGCCGAAGTGCCAGCTCAACTGTCTCCGGAGCTCTTAAACATAATGGAGCAAAGACTCTCCGCTATTGAGTACAGGACTTCTTGTCTTAACAATTTTCTAAATCAGCCAGAAGCATCACCATCAGAGTATGCAAGAGCTAACAAGGAGCTGCGGAAGCTAAGTGGCTCTGTGGACCTTATTAAGGAATTGAGGGCCAAACAGAAGGAAATTGATGGCTTGAAGTCACTAATGGCTGAATGTTCTGAGGATAAAGACATGCTTAATATGGCTACTGAGGAAATGGGTCAGGCAGTGGAAGAAGAAAGAAAACTGCAAAATTTGCTGCTGAAGTCATTACTTCCTAAGGATGATGCTGATGAAAGGGATTGCATTTTAGAGGTGCGAGCAGGCACTGGTGGGGAGGAGGCTTCCTTGTTTGCAATGGATATCTTTAGAATGTATGAGAAGTATGCTCTCGAGAAAGGCTGGAAGTTTGAAGTAGTAGATATAGCTCAATCTGATCATAAAGGATACAAGGAGGCTAGTGCTGCAATTGCAGGAGACGGTGTTTTCAGGAAACTAAAATTTGAGAGTGGAATTCATAGGGTCCAGCGAGTTCCTGTGACAGAAAAGTCAGGACGGATTCATACCAGTGCTGTTTCTGTTGCAATCCTTCCTCAGGCTGATGAGGTGGATGTTCAATTGAAGAATGAAGACTTAAGAATCGATACCTATAGATCTGGTGGTTCAGGTGGTCAGCATGCAAATACAACCAACAGTGCTGTTAGAGTAACCCACATTCCAACAGGGATTATGATTACTATACAAGATGAGCGTTCTCAACATATGAACAAGGCCAAAGCTCTCAAGGTACTGTGTGCAAAACTATATGAAATGGAAAGGCTCAGACTTCGGAGTAGCCGATCAAAGCTTCGATTAGAGCAGATTGGTAGTGGGGATAGATCTGAACGCATCAGAACATACAATTTTCCTCAGGGCCGTGTAACTGATCATAGAGTTGGTATCACTTATCACTCGGTAGATGATGTGATGCAAGGTGAAAATCTTGATGTCTTCATTGATGCTCTTCTATTGCAAGAAGAAATGGATGCAATGGCAACTTTTAGTTCGTCTCAGTAA 1248 0.4263 MRFHGNFIICRYLSRLRNQFNSNFEFPLPNFRHRAPFFLRSYSAEVPAQLSPELLNIMEQRLSAIEYRTSCLNNFLNQPEASPSEYARANKELRKLSGSVDLIKELRAKQKEIDGLKSLMAECSEDKDMLNMATEEMGQAVEEERKLQNLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAMDIFRMYEKYALEKGWKFEVVDIAQSDHKGYKEASAAIAGDGVFRKLKFESGIHRVQRVPVTEKSGRIHTSAVSVAILPQADEVDVQLKNEDLRIDTYRSGGSGGQHANTTNSAVRVTHIPTGIMITIQDERSQHMNKAKALKVLCAKLYEMERLRLRSSRSKLRLEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSVDDVMQGENLDVFIDALLLQEEMDAMATFSSSQ* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1896 415 SUPERFAMILY Release factor 82 403 IPR045853 -
Gso3g1896 415 Hamap Peptide chain release factor 1 [prfA]. 58 412 IPR004373 GO:0006415|GO:0016149
Gso3g1896 415 Gene3D - 264 359 - -
Gso3g1896 415 Coils Coil 106 126 - -
Gso3g1896 415 Gene3D - 53 160 - -
Gso3g1896 415 Coils Coil 130 150 - -
Gso3g1896 415 PANTHER LD18447P 37 413 - -
Gso3g1896 415 Gene3D - 168 396 - -
Gso3g1896 415 PANTHER LD18447P 37 413 - -
Gso3g1896 415 SMART PCRF_a_2 118 233 IPR005139 GO:0006415
Gso3g1896 415 Pfam PCRF domain 68 258 IPR005139 GO:0006415
Gso3g1896 415 TIGRFAM prfA: peptide chain release factor 1 59 412 IPR004373 GO:0006415|GO:0016149
Gso3g1896 415 Pfam RF-1 domain 265 375 IPR000352 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1896 Gso-Chr3 44485311 44489425 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1896 K02835 - gmx:100800412 790.801