Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1887 ATGCCGAAACAAAGGTTGGAGGGTAAGGTGGCTCTTATCACTGGAGCAGCAAGTGGGATTGGAGAAGAGACAGTGAGATTGTTCGCTGAACATGGAGCACTTATTGTTGCAGCAGATATTCAAGATGAACAAGGCCACCAAGTTGCAGCTTCAATAGGGTCAGAGAGAGTGACCTACCACCATTGTGATGTGAGAGATGAAAACCAAGTTGAAGAAACAATCAAGTTCACTTTGGAAAAACATGGTCGCATAGATGTTTTGTTCAGCAACGCGGGAATAATAGGTTCCTTATCTGGGATCCTTGACCTTGATCTGAATGAGTTTGACAACACAATTGCCACAAATGTTCGCGGTGTAGCCGCCACGATTAAGCACACGGCACGTGCCATGGTTGCTAAAAGCACCCGTGGATCCATCATATGCACCACAAGTGTGGCTGCTATGATTGGTGGAACTGGACCTCATGGCTATACCACATCAAAACATGCTCTTCTGGGGTTGGTGAAATCAGCTTGTAGTGAACTTGGTGCTTATGGAATAAGAGTTAATAGCATATCCCCTTTTGGAGTTGCAACACCTCTTGCATGCAAAGCTTTCAACTTTGAACCTGAGCAAGTTGAAGCTAATAGCTGCTCACAGGCTAATCTAAAAGGTGTTGTGTTGAAGGCTAGGCATATAGCTGAAGCAGCTTTGTTTCTTGCTTCTGATGATGCTGTTTACATCAGTGGTCACAACTTGGTGGTGGATGGTGGCTTCTCTATGGTTAATAGAAGTTATTCCTTCACACCAGCTTAA 795 0.4453 MPKQRLEGKVALITGAASGIGEETVRLFAEHGALIVAADIQDEQGHQVAASIGSERVTYHHCDVRDENQVEETIKFTLEKHGRIDVLFSNAGIIGSLSGILDLDLNEFDNTIATNVRGVAATIKHTARAMVAKSTRGSIICTTSVAAMIGGTGPHGYTTSKHALLGLVKSACSELGAYGIRVNSISPFGVATPLACKAFNFEPEQVEANSCSQANLKGVVLKARHIAEAALFLASDDAVYISGHNLVVDGGFSMVNRSYSFTPA* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1887 264 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Gso3g1887 264 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Gso3g1887 264 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Gso3g1887 264 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Gso3g1887 264 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Gso3g1887 264 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Gso3g1887 264 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B 3 260 - -
Gso3g1887 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 255 IPR036291 -
Gso3g1887 264 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
Gso3g1887 264 Gene3D - 1 260 - -
Gso3g1887 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Gso3g1887 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Gso3g1887 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Gso3g1887 264 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1887 Gso-Chr3 44425665 44427311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1887 2 254 Acyl Lipid Metabolism Gene Families AT3G55290 30.597 9.45e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1887 - - gmx:100811279 516.924