Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1873 ATGGGTACGGAGAGAAAGAGGAAGGTGAGCTTGTTCGATGTGGTAGACGATTCCGCGGCAAAGATGGCGAAAACCAATGGCGGCGCTGCTAATAATCTCATCAATCACTGGACCTCAAGGCCTTACTCCCAAAGGTACTTCGAGATTCTGGAGAAGAGAAAGACCCTCCCCGTTTGGCACCAGAAAGAAGAGTTTTTGCAGGTTCTCAAAGATAACCAGACTTTGATTCTCGTCGGTGAAACTGGTAGTGGCAAAACTACGCAGATTCCTCAGTTTGTTTTGGATGCTGTCGAATTAGAGACACCGGATAAACGTAAGAAGATGATGATAGCGTGCACTCAGCCTCGGAGAGTGGCTGCAATGTCTGTTTCGCGTCGTGTGGCCGAAGAGATGGATGTAACTATTGGGGAAGAGGTTGGTTACAGTATCAGATTTGAAGACTGCAGTAGTGCAAAGACGGTTTTGAAGTATCTAACGGATGGTATGCTCTTAAGAGAAGCTATGACGGATCCACTTTTGGAACGGTACAAGGTTATTATTCTTGACGAGGCACATGAGAGGACTTTAGCCACGGATGTGCTATTTGGTCTTCTGAAGGAAGTGCTTAAAAATAGACCTGATATGAAGTTGGTTGTTATGAGTGCGACTCTTGAAGCTGAAAAGTTTCAGGGCTATTTTTTCGGTGCCCCTCTCATGAAAGTTCCTGGAAGGCTACATCCTGTTGAAATTTTCTATACTCAGGAACCTGAAAGGGATTACTTGGAGGCTGGCATTAGGACAGTGGTACAGATACACATGTGTGAGCCTCCAGGAGATATACTTGTATTTTTGACTGGAGAGGAAGAGATAGAAGATGCTTGCCGCAAAATAACAAAAGAAATTTCTAATCTGGGAGATCAGGTGGGCCCTGTTAAAGTTGTACCCCTGTATTCTACACTTCCTCCTGCTATGCAGCAGAAGATTTTTGAGCCAGCTCCACCTCCACTGAAGGAGGGTGGAACTCCTGGAAGGAAGATTGTGGTATCAACGAACATAGCAGAAACGTCCTTGACAATTGATGGTATTGTTTATGTCATTGACCCCGGTTTTGCTAAGCAGAAGGTTTATAACCCACGAGTTCGTGTGGAGTCTTTATTAGTGTCACCAATATCGAAAGCTAGTGCACATCAGAGATCAGGGCGTGCTGGAAGAACTCAACCAGGGAAGTGCTTTAGACTTTACACTGAGAAAAGTTTCAATAATGATCTACAGCCACAGACCTATCCTGAAATTTTGAGATCAAATCTTGCCAACACAGTTCTTACTTTGAAGAAACTGGGTATAGACGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCTCCTGAGACCTTAATGCGTGCATTGGAAGTGTTGAATTACTTGGGTGCACTGGATGACGATGGTAACTTAACAAAACTGGGTGAGATTATGAGTGAATTTCCCTTGGACCCACAGATGTCAAAGATGCTCGTTGTCAGTCCTGAATTCAACTGTTCAAATGAGATTCTGTCCGTTTCTGCCATGCTTTCAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCTAAAGCTAGGTTCGGGCACATTGATGGAGATCATCTCACACTGTTGAATGTCTATCATGCGTACAAGCAAAATAATGAGGATCCCTCTTGGTGCTACGATAACTTTGTTAATCATAGGGCATTGAAATCAGCTGATAATGTTAGACAACAATTAGTGCGTATCATGTCCCGGTTTAATCTGAAGCTATGCAGCACTGACTTTAATAGCCGCGACTACTATGTCAACATAAGAAAAGCTATGCTAGCTGGGTATTTCATGCAGGTAGCTCATCTGGAGCGTACAGGACACTACTTGACAGTGAAAGACAACCAGGTGGTGCATTTGCATCCATCCAATTGCCTGGATCACAAGCCTGAATGGGTCATTTATAATGAATATGTTCTTACCAGTCGGAATTTTATTCGTACTGTTACAGACATACGTGGGGAATGGTTGGTTGATGTAGCACCACATTACTATGATTTGTCTAATTTCCCCCAATGCGAGGCAAAGCGTGTCCTCGAGAGACTTTACAAGAAGCGAGAAAAGGAAAAGGAGGAAGCCAGGAGCCGCAGATGA 2163 0.4415 MGTERKRKVSLFDVVDDSAAKMAKTNGGAANNLINHWTSRPYSQRYFEILEKRKTLPVWHQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRKKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDMKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISNLGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPLKEGGTPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMSRFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDVAPHYYDLSNFPQCEAKRVLERLYKKREKEKEEARSRR* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1873 720 CDD SF2_C_RHA 239 407 - -
Gso3g1873 720 SMART helicmild6 281 399 IPR001650 -
Gso3g1873 720 Gene3D - 9 237 IPR027417 -
Gso3g1873 720 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 1 719 - -
Gso3g1873 720 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 611 687 IPR011709 -
Gso3g1873 720 SMART ha2_5 460 550 IPR007502 GO:0004386
Gso3g1873 720 Gene3D - 238 420 IPR027417 -
Gso3g1873 720 Pfam DEAD/DEAH box helicase 62 220 IPR011545 GO:0003676|GO:0005524
Gso3g1873 720 Gene3D - 444 552 - -
Gso3g1873 720 CDD DEXHc_DHX15 44 234 IPR044756 GO:0003724|GO:0005524
Gso3g1873 720 Pfam Helicase conserved C-terminal domain 266 398 IPR001650 -
Gso3g1873 720 Coils Coil 699 719 - -
Gso3g1873 720 Pfam Helicase associated domain (HA2) 461 549 IPR007502 GO:0004386
Gso3g1873 720 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 66 235 IPR014001 -
Gso3g1873 720 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 260 440 IPR001650 -
Gso3g1873 720 SMART ultradead3 53 244 IPR014001 -
Gso3g1873 720 PANTHER ATP-DEPENDENT RNA HELICASE 1 719 - -
Gso3g1873 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 627 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1873 Gso-Chr3 44298985 44302945 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1873 K12820 - gmx:100807162 1399.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1837 19 47090841 47093419 Gso3g1873 3 44298985 44302945 GST