Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1827 ATGATGGAGTCCTGTGATTGTATAGATACGCAGTATCCGCCGGATGAACTTCTTGTGAAGTATCAGTATATCTCGGATGTGCTAATTGCTCTTGCGTATTTTTCGATTCCGGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCGTATAGATGGGTGCTTATGCAGTTTGGTGCCTTTATTGTTCTCTGTGGAGCAACTCATTTCATAAACCTGTGGACATTCTCTCCGCACTCTAAGTCTGTTGCTGTTGTCATGACGATTGCCAAAGTTTCGTGTGCTATTGTGTCATGTGCGACGGCACTGATGCTTGTACACATTATTCCCGATCTGTTGAGTGTCAAGAGGCGCGAATCGATCCTCAAGAACAAGGCTGAAGAGCTTGACAGAGAGATGGGACTTATTCTTACTCAGGAAGAGACGGGAAGACATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTTGACAGGCATACAATTTTAAAGACTACTCTTGTGGAGCTGGGGAGGACTTTGGGCTTGGAGGAGTGTGCATTATGGATGCCTTCGAGAAGTGGTCTGAATCTGCAACTTTCCCATACTTTAACCTATCATGTGCAAGTTGGGTCTACGGTGCAAACAAACAATCCTATTGTCAATGAAGTTTTCAACAGCCCTCAAGCTATGCGGATACCACCCACCTGTCCATTGGCCAGGATCAGACCTCTTGTGGGAAGATATGTGCCCCCTGAAGTTGTTGCTGTTCGGGTGCCGCTTTTGAATCTGTCAAATTTTCAAATTAACGATTGGCCTGATATTTCAGCAAAGAGCTATGCAATCATGGTTCTCATCCTCCCTACTGACAGTGTTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTTGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGTGCCCGTGATCAACTCATGGAGCAGAATGTTGCTTTAGATTTAGCCCGGCGAGAGGCAGAGATGGCAATTCATGCTCGCAATGATTTTCTTGCTGTCATGAATCATGAAATGAGGACACCAATGCATGCAATTATAGCATTGTCATCACTTCTCTTGGAGACTGAACTGACGCCAGAGCAAAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCAACACTCATTAATGATGTTCTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAATGGGAAAATTCAACCTCCATGGAGTTTTGGGAGAGATTGTTGAACTGATAAAACCAATAGCATCCGTGAAAAAGTTACCTATCACCTTAATTCTGTCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGGCTTACACAAACTCTTTTGAATGTCGTGGGTAATGCTGTCAAATTCACTAAGGAGGGCTATGTTTCTGTAAGAGTATCAGTTGCAAAACCAGAATCTTCACAGGATTGGCGACCTCCAGAGTTTTATCCAGCATCTAGTGATGGCCATTTCTACATTCGAGTCCAGGTTAAGGACTCTGGATGTGGGATTCTCCCACAAGATATTCCGCATCTCTTTACCAAGTTTGCCCAGTCTCGGAGTGGACCAGCTCGACCTAGCAGTGGTGCAGGTCTTGGGCTTGCCATTTGTAAAAGATTTGTAAACCTCATGGGAGGCCACATATGGATTGAGAGTGAGGGCCTTGACAAAGGAAGCACAGCTACATTTATAGTCAAACTTGGGATTTGTGGCAATCCAGATCCATCCGATCATCAAGCTGCAAACAGAAGCCAAGCATATAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTCATCACAGATGAAAACGACACTGGTTTTTCTACTAGACGCAATCAAAGAAGTTTCTAA 1911 0.4411 MMESCDCIDTQYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSPHSKSVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKRRESILKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVQTNNPIVNEVFNSPQAMRIPPTCPLARIRPLVGRYVPPEVVAVRVPLLNLSNFQINDWPDISAKSYAIMVLILPTDSVRKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLATLINDVLDLSRLEDGSLELEMGKFNLHGVLGEIVELIKPIASVKKLPITLILSPDLPTHAIGDEKRLTQTLLNVVGNAVKFTKEGYVSVRVSVAKPESSQDWRPPEFYPASSDGHFYIRVQVKDSGCGILPQDIPHLFTKFAQSRSGPARPSSGAGLGLAICKRFVNLMGGHIWIESEGLDKGSTATFIVKLGICGNPDPSDHQAANRSQAYSGSGGLARFKPFITDENDTGFSTRRNQRSF* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1827 636 Pfam His Kinase A (phospho-acceptor) domain 345 409 IPR003661 GO:0000155|GO:0007165
Gso3g1827 636 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 635 - -
Gso3g1827 636 ProSiteProfiles Histidine kinase domain profile. 351 588 IPR005467 -
Gso3g1827 636 CDD HATPase_EvgS-ArcB-TorS-like 461 586 - -
Gso3g1827 636 Gene3D - 409 589 IPR036890 -
Gso3g1827 636 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 330 410 IPR036097 GO:0000155|GO:0007165
Gso3g1827 636 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 398 586 IPR036890 -
Gso3g1827 636 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 586 IPR003594 -
Gso3g1827 636 SMART gaf_1 159 318 IPR003018 GO:0005515
Gso3g1827 636 Gene3D - 139 309 IPR029016 -
Gso3g1827 636 Gene3D - 310 408 - -
Gso3g1827 636 SUPERFAMILY GAF domain-like 159 320 - -
Gso3g1827 636 Pfam GAF domain 159 308 IPR003018 GO:0005515
Gso3g1827 636 CDD HisKA 342 405 IPR003661 GO:0000155|GO:0007165
Gso3g1827 636 SMART HisKA_10 344 409 IPR003661 GO:0000155|GO:0007165
Gso3g1827 636 SMART HKATPase_4 456 588 IPR003594 -
Gso3g1827 636 PANTHER ETHYLENE RESPONSE SENSOR 1 2 635 - -
Gso3g1827 636 PRINTS Bacterial sensor protein C-terminal signature 512 526 IPR004358 GO:0016310|GO:0016772
Gso3g1827 636 PRINTS Bacterial sensor protein C-terminal signature 530 540 IPR004358 GO:0016310|GO:0016772
Gso3g1827 636 PRINTS Bacterial sensor protein C-terminal signature 547 565 IPR004358 GO:0016310|GO:0016772
Gso3g1827 636 Coils Coil 113 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1827 Gso-Chr3 43915465 43919986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1827 2 600 Miscellaneous Gene Families AT2G40940 76.962 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1827 K14509 - gmx:100794417 1232.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1794 19 46674357 46678224 Gso3g1827 3 43915465 43919986 GST