Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1789 ATGGCCACCCTCTCCGCATGCGCTTCTCCTCCATGGCCAAACCCTGATTCTCCCAATTCAAATCCAAACCCTAATTTCCTCCCCGACCAATCTCAAACCCTCGACTTCGACTCCCTCATGCCTCCGCAACCCGAATCCCCACCGCCCAACCATCACCACTCCCCCGACGCCTCTCCACCGGAATCCTCCCCGTCGCCGCCGCCTCCGTCGATCCTCTACCTCTCCTTCAACCAGGACCAGGCCTGCTTCGCCGCCGCCGCCGACAACGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGCTCTTCCGGCGCGAGTTCGACGGCGGCGGGATCGGCCACGTGGAGATGCTCTTCCGCTGCAACATCCTCGCCCTCGTCGGCGGCGGGCCTAACCCTCAGTACCCGCCCAACAAGGTCATGATCTGGGACGACCACCAGGGCCGCTGCATCGGCGAGCTCTCATTCCGCGCCGCCGTGCGCGGTGTCCGCCTCCGCCGCGACCGCATCATCGTCGTCGTCGAACAGAAGATCTTCGTCTACAACTTCGCGGACCTCAAGCTCGTGCAGCAGATTGAGACCGTTCCAAACCCTAAGGGGCTCTGCGCGGTTTCGCAGCTGTCCGATTCTCTCGTTCTCGCGTGCCCCGGTTTGCACAAGGGTCAGATTCGCGTGGAGCACTACGCGCAGAAGAAGACCAAGTTCATCTCAGCGCATGATTCCAGAATCGCTTGCTTCGCTCTCACGCTTGATGGACAGTTAATCGCCACCGCCAGCACCAAGGGTACGCTGATTCGGATTTTTGACACTGATCATGGCACGCTTCTTCAGGAAGTGAGAAGAGGTGCGAATGCTGCTGAGATCTATAGTTTGGCATTCTCTTCTACTGCTCAGTGGCTAGCAGTCTCAAGTGACAAGGGTACTGTCCATGTATTCAGCCTCAAGGTTAATTCTAGCATCCCCGAGCAGGAAAAGTCACAAAGTTCATCCAATTCAGATGCTGCCATTACCCCATCTAGCTCTTCTCGCTCCTTCATTAAATTGAAAGGGGTGTTGCCCAAGTACTTCAATTCTGAGTGGTCAGTTGCTCAGTTTCACTTACAAGAGGGCTCTCATTACACAGTTGCATTTGGTCTCCAAAAGAATACAGTCATTATTCTTGGTATGGATGGAAGCTTCTATAGATGCCAATTTGATCCAGTACATGGAGGGGAGATGACTCAGCTGGAATATCATAACTTTTTAAAGCCAGAACCAGAAACAGCCTTGTGA 1272 0.5511 MATLSACASPPWPNPDSPNSNPNPNFLPDQSQTLDFDSLMPPQPESPPPNHHHSPDASPPESSPSPPPPSILYLSFNQDQACFAAAADNGFRIYNCDPFRELFRREFDGGGIGHVEMLFRCNILALVGGGPNPQYPPNKVMIWDDHQGRCIGELSFRAAVRGVRLRRDRIIVVVEQKIFVYNFADLKLVQQIETVPNPKGLCAVSQLSDSLVLACPGLHKGQIRVEHYAQKKTKFISAHDSRIACFALTLDGQLIATASTKGTLIRIFDTDHGTLLQEVRRGANAAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKVNSSIPEQEKSQSSSNSDAAITPSSSSRSFIKLKGVLPKYFNSEWSVAQFHLQEGSHYTVAFGLQKNTVIILGMDGSFYRCQFDPVHGGEMTQLEYHNFLKPEPETAL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1789 423 MobiDBLite consensus disorder prediction 41 71 - -
Gso3g1789 423 PANTHER WD REPEAT PHOSPHOINOSITIDE-INTERACTING-LIKE PROTEIN 7 419 - -
Gso3g1789 423 SUPERFAMILY WD40 repeat-like 64 324 IPR036322 GO:0005515
Gso3g1789 423 SMART WD40_4 41 95 IPR001680 GO:0005515
Gso3g1789 423 SMART WD40_4 272 313 IPR001680 GO:0005515
Gso3g1789 423 SMART WD40_4 229 269 IPR001680 GO:0005515
Gso3g1789 423 MobiDBLite consensus disorder prediction 23 39 - -
Gso3g1789 423 Pfam WD domain, G-beta repeat 282 312 IPR001680 GO:0005515
Gso3g1789 423 MobiDBLite consensus disorder prediction 1 71 - -
Gso3g1789 423 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 7 419 - -
Gso3g1789 423 Gene3D - 70 401 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1789 Gso-Chr3 43658936 43662179 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1789 K22991 - gmx:100781692 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1755 19 46401027 46404419 Gso3g1789 3 43658936 43662179 GST