Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1728 ATGGACGTGGGATCGTGGAGTTCTTCTCCCTCCAAGATCAAGTCCCGATTCTCCTTCCAAGATCGCCTCTTCCGCAGAAAGAATTCTCAGGAAAATTTGGACAGGTTTATTCCTAATCGCTCTGCGATGGACTTCGATTACGCGCACTACATGCTCACAGAGGGGAATAAGAAGGGCAAAGAGAAAGAGAACCCTGTGGTGACATCACCGTCCCGAGAAGCATACCAGAAGCAACTCGCTGAGGCTTTCAACATGAATCGTACTCGAATCTTGGCGTTTAAGAACAAACCCCGAACGCCGGTTGAACTCATTCCCAGTTCCATCCTAAACCCTCCTCCTCCTCCTCCTAATTCCTCTAAGCCAAGACGGTACATTCCTCAGAGTTCGGAGAAGACGCTGGATGCTCCCGATATACTGGATGATTATTATTTGAATCTGTTGGACTGGGGCAGCGGCGATGTTCTGAGCATTGCCCTTGGAAACACGGTGTATCTATGGAATGCCTCTGATAGCTCCACTGCTGAACTTGTCACTGTGGATGAGGAAGATGGACCGGTTACAAGTGTTGCCTGGGCCCCCGATGGACGCCATGTAGCCATTGGTTTGAACAACTCTCATGTTCAGCTCTGGGATTCTCATGCTTCTAGGCTGCTAAGAACACTGAAGGGTGGACACCAAGCACGAGTGGGTTCACTGTCTTGGAACAATCATATCCTCACAACAGGAGGGATGGATGGTAGGATTGTTAACAACGATGTTCGAGTGAGGCATCACATTGTTGAATCTTACAGGGGACATCAACAGGAAATCTGTGGGCTCAGGTGGTCTCCCTCGGGACAACAATTGGCGAGTGGTGGCAACGATAATGTTATTCACATATGGGACAGGACTATGGTTTCTTCAAATTCACCGACCCATTGGCTTCACAGGTTTGAGGAGCATAGAGCTGCCGTGAAGGCACTAGCTTGGTGTCCATTCCAGGCAAATCTCCTAGCTTCTGGTGGAGGTGGGGGTGATCACTGCATTAAGTTCTGGAACACTCATACAGGGGCGTGCTTGAACTCTGTTGACACAGGCTCACAAGTGTGCGCTCTGCTGTGGAGCAAGAATGAGCGTGAGTTGCTTAGCTCTCATGGTTTCACCCAGAACCAGCTCGCTCTTTGGAAATACCCTTCAATGCTGAAGATGGCAGAGCTCAAGGGTCATACCTCCAGGGTGTTGTATATGGCACAAAGTCCAAACGGGTGTACTGTGGCCTCTGCAGCAGGGGACGAGACACTGAGATTTTGGAATGTCTTTGGGACTCCACAGGCTTCCAAACCTGCACCAACAGCTAGCACTGATCCATTTGCTCATGTGAACCGTATTCGTTGA 1374 0.4978 MDVGSWSSSPSKIKSRFSFQDRLFRRKNSQENLDRFIPNRSAMDFDYAHYMLTEGNKKGKEKENPVVTSPSREAYQKQLAEAFNMNRTRILAFKNKPRTPVELIPSSILNPPPPPPNSSKPRRYIPQSSEKTLDAPDILDDYYLNLLDWGSGDVLSIALGNTVYLWNASDSSTAELVTVDEEDGPVTSVAWAPDGRHVAIGLNNSHVQLWDSHASRLLRTLKGGHQARVGSLSWNNHILTTGGMDGRIVNNDVRVRHHIVESYRGHQQEICGLRWSPSGQQLASGGNDNVIHIWDRTMVSSNSPTHWLHRFEEHRAAVKALAWCPFQANLLASGGGGGDHCIKFWNTHTGACLNSVDTGSQVCALLWSKNERELLSSHGFTQNQLALWKYPSMLKMAELKGHTSRVLYMAQSPNGCTVASAAGDETLRFWNVFGTPQASKPAPTASTDPFAHVNRIR* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1728 457 Pfam WD domain, G-beta repeat 397 431 IPR001680 GO:0005515
Gso3g1728 457 Pfam WD domain, G-beta repeat 308 346 IPR001680 GO:0005515
Gso3g1728 457 Pfam WD domain, G-beta repeat 261 295 IPR001680 GO:0005515
Gso3g1728 457 Pfam Anaphase-promoting complex subunit 4 WD40 domain 178 236 IPR024977 -
Gso3g1728 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 399 432 - -
Gso3g1728 457 ProSitePatterns Trp-Asp (WD) repeats signature. 418 432 IPR019775 -
Gso3g1728 457 MobiDBLite consensus disorder prediction 106 121 - -
Gso3g1728 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 211 - -
Gso3g1728 457 SUPERFAMILY WD40 repeat-like 135 432 IPR036322 GO:0005515
Gso3g1728 457 SMART WD40_4 392 431 IPR001680 GO:0005515
Gso3g1728 457 SMART WD40_4 349 389 IPR001680 GO:0005515
Gso3g1728 457 SMART WD40_4 256 295 IPR001680 GO:0005515
Gso3g1728 457 SMART WD40_4 172 211 IPR001680 GO:0005515
Gso3g1728 457 SMART WD40_4 214 252 IPR001680 GO:0005515
Gso3g1728 457 SMART WD40_4 304 346 IPR001680 GO:0005515
Gso3g1728 457 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 455 IPR033010 GO:0010997|GO:0097027|GO:1904668
Gso3g1728 457 CDD WD40 150 431 - -
Gso3g1728 457 MobiDBLite consensus disorder prediction 438 457 - -
Gso3g1728 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Gso3g1728 457 MobiDBLite consensus disorder prediction 102 130 - -
Gso3g1728 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 399 432 IPR001680 GO:0005515
Gso3g1728 457 Gene3D - 86 434 IPR015943 GO:0005515
Gso3g1728 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 295 - -
Gso3g1728 457 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 455 - -
Gso3g1728 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 295 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1728 Gso-Chr3 43129818 43132117 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1728 224 432 Miscellaneous Gene Families AT5G08390 22.535 5.14e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1728 K03363 - gmx:100801495 889.412