Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1725 ATGAGCGCCATGGATTTCTCTTCCATCTATGGTGTCTCACACAAACCCTTCCTCACCCTCTTCCTTCTCTTCCTTCTACCTCTCCATTCTCACTCTCACAACTCTACAACCTCAGCTCAGATTAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCCCATTACACCGAACTCGCCGAACTTGTTGAGAAAGCGCTTCTTCTCCAGCAGCTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCCGAAACCAAGCCCTTGAACGCGACTTAGACCCTGAATTCAAGCGTTTCTTGCTCGAGCCTCGCAATCTCAGGTCCCTCCAGACTCTCTTGATGTCTCACATTCTCCCCACGCGAATCGCCTCTCACCACTGGCCCGCCGCCGACCTCCTCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCTCCAAGCCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGTATCGAGCGCCTCATCGTCCCCCGATCCGTCCAGGAGGATTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCCGAGGGAGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCTGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCCTGGCACCGGGACCGTTCATCGCTCCTGCGCCGGCGCCGGGACCGGGAGGCCCGAAACACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACACTCTTGCATTACGGAGGCTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCGGAAGGCTACGTTCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAACAGATCATGTACTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTTCGCTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACCGATGGAAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAAGAAGAAGAACGCACTCGCCGCATCAGTCCACTTGTCAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGATGGAAGTCGCCTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGA 1362 0.5675 MSAMDFSSIYGVSHKPFLTLFLLFLLPLHSHSHNSTTSAQINSNSILVALLDSHYTELAELVEKALLLQQLEDAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRIASHHWPAADLLHRTLSDHHLHLASKPSGQRTVDSAEILRADDVLRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPFIAPAPAPGPGGPKHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEEERTRRISPLVKVAAPKPRRGKLMEVACSMFGSFGQVCQ* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1725 453 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 4 451 IPR044654 -
Gso3g1725 453 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 4 451 - -
Gso3g1725 453 SUPERFAMILY FAS1 domain 242 411 IPR036378 -
Gso3g1725 453 Gene3D FAS1 domain 283 410 IPR036378 -
Gso3g1725 453 ProSiteProfiles FAS1/BIgH3 domain profile. 264 407 IPR000782 -
Gso3g1725 453 SMART fasc_3 305 410 IPR000782 -
Gso3g1725 453 SMART fasc_3 81 184 IPR000782 -
Gso3g1725 453 SUPERFAMILY FAS1 domain 43 184 IPR036378 -
Gso3g1725 453 Pfam Fasciclin domain 299 409 IPR000782 -
Gso3g1725 453 Pfam Fasciclin domain 54 183 IPR000782 -
Gso3g1725 453 Gene3D FAS1 domain 46 183 IPR036378 -
Gso3g1725 453 ProSiteProfiles FAS1/BIgH3 domain profile. 42 181 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1725 Gso-Chr3 43102303 43105240 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1725 - - gmx:100800956 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1725 3 43102303 43105240 Gso3g1725 3 43102303 43105240 ECH
Gso19g1692 19 45862163 45865143 Gso3g1725 3 43102303 43105240 GST