Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1683 ATGGCCCAATCCCATGGATCCATCCTCACTCGATCAGTGTGGTCCTCCAATCTCGAATCGGAGTTCGACTTAATCCGATCCGTCATCGATTCGTTCCCTCTCATCTCGATGGACACCGAGTTCCCCGGTGTCGTCGTGCGTCCCGACGCCGGCGACCCCTCCTTCCGCCACCGCCAACCCGTCGCGCACTACGCTGTACTCAAAGCCAACGTCGACCGCCTCCACCTGATTCAGATCGGCCTTACCCTTTCCGACAACGCCGGAAACCTTCCCACCCTCGGCACCTCCAACGCCTTCATCTGGGAATTCAACTTCAAAGATTTCGACGTCGCGCGTGACGCCCACGCTCACGACTCTGTGGAGTTGCTGCGCCGCCAGGGCATCGATTTCGAGAAGAATCGCGATTTCGGGATCGACTCGTTCCGGTTCGCGGAGCTCATGATGTCGTCCGGTCTGGTCTGCGACGACGCCGTTAGTTGGGTGACTTTTCACAGCGCCTATGATTTCGGATATTTGGTGAAATTGATGACACATCGCACATTGCCAGAAGAATTAAGAGAGTTTCTGCGTCTGGTGAGGGTGTTTTTCGGAGACAGAGTCTTTGATGTGAAGCATTTGATGAGGTTCTGCTCAAACCTGCACGGTGGATTGGACCGTGTTTGTCAGTCGCTGAAGGTGGAACGTGTTATTGGAAAAAGTCATCAGGCTGGTTCTGATAGTTTGCTCACTCTGCACGCGTTTCAGAATATCAGAGAGAATTACTTTGACAAGGCTGACGGACTTGTTCAGTACGCTGGTGTCTTGTATGGTTTGGAGGTTTTCTGA 825 0.5333 MAQSHGSILTRSVWSSNLESEFDLIRSVIDSFPLISMDTEFPGVVVRPDAGDPSFRHRQPVAHYAVLKANVDRLHLIQIGLTLSDNAGNLPTLGTSNAFIWEFNFKDFDVARDAHAHDSVELLRRQGIDFEKNRDFGIDSFRFAELMMSSGLVCDDAVSWVTFHSAYDFGYLVKLMTHRTLPEELREFLRLVRVFFGDRVFDVKHLMRFCSNLHGGLDRVCQSLKVERVIGKSHQAGSDSLLTLHAFQNIRENYFDKADGLVQYAGVLYGLEVF* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1683 274 Pfam CAF1 family ribonuclease 13 138 IPR006941 -
Gso3g1683 274 Gene3D - 1 273 IPR036397 GO:0003676
Gso3g1683 274 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 3 273 - -
Gso3g1683 274 SUPERFAMILY Ribonuclease H-like 3 272 IPR012337 -
Gso3g1683 274 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3 273 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1683 Gso-Chr3 42715332 42716595 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1683 K12581 - gmx:100790027 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1683 3 42715332 42716595 Gso3g1683 3 42715332 42716595 ECH
Gso19g1654 19 45469800 45471110 Gso3g1683 3 42715332 42716595 GST