Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1680 ATGGGCAACGCTCAGTCACCTTCCAACAATGATCCTCGATATGTTTCAGCAACCAGAGCTTTTACTCAAAAGGAACTTGAAGACTTGAGGTCTCTGTTCAACAATCTGGCTAATCAATCCCAGAGCAACGGGAAATACATCCCTCCCTCCGTTTTTCAGTCATATTTTGGATTTCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAGGCTAACCTTTGAAGACCTCGTGGTTGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTAGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCCATTTTTAATGATATATTACGCATAAAAGGTTCTGATGATAGATCAAGTTCACATGAGGATATTGTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCATGATGGAGGGGGCACTGAGGGGACAATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTCCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGCCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATACTTGGCATATTGGAGGCGCACTCTCTCACCAAGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCCTGGGCAACATTTCAAACCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAAGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGTCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAACCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTGGGTTTGTTCATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTACCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAA 1269 0.4145 MGNAQSPSNNDPRYVSATRAFTQKELEDLRSLFNNLANQSQSNGKYIPPSVFQSYFGFHGPLGERMFDLVTQERKDQRLTFEDLVVAKATYEKGTKDEIEEFIFRLLDVSGDNFVGRSDLETVMIAIFNDILRIKGSDDRSSSHEDIVNIFLNAANFSKHDGGGTEGTMSFEDFRSWCTHLPSVRKLLGSLLLPPDSGRPGYQIPKLLTSKAIDSNIILLRKEYTWHIGGALSHQDLEDWNLLYHSSVNGLSFNTFLGNISNHAGPTVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPVASIFRPTGANNNLQWCAINFSSEDIPNGIGFGGRVNHLGLFISANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQDATQDKNDAVKGTILERFKEDRNMLKMVGLANSSE* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1680 422 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 414 - -
Gso3g1680 422 Coils Coil 19 39 - -
Gso3g1680 422 Pfam TLD 242 385 IPR006571 -
Gso3g1680 422 Gene3D - 3 190 - -
Gso3g1680 422 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Gso3g1680 422 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 1 414 - -
Gso3g1680 422 SUPERFAMILY EF-hand 6 191 IPR011992 -
Gso3g1680 422 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Gso3g1680 422 ProSiteProfiles TLDc domain profile. 218 386 IPR006571 -
Gso3g1680 422 SMART 109ultra 219 386 IPR006571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1680 Gso-Chr3 42678281 42684219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1680 103 421 EF-hand Containing Proteins AT5G06260 62.112 4.90e-154 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1680 - - gmx:100788439 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1680 3 42678281 42684219 Gso3g1680 3 42678281 42684219 ECH
Gso19g1651 19 45425244 45430443 Gso3g1680 3 42678281 42684219 GST