Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1665 ATGGCAGGGGCGGATATTAATAGTGACGGGAACGGGAGTGAAAGGGAGTTAGCGGGAAACAGCTATAACGGTTTTGCGGAAGCTCCAGAGGCTTCTGTTAGTGCTAGTGGTTGTGAAGGAAACGACAGCGTTTCCTACGCGAACGTCCTGCGTTCGAGGAACAAGTTTGTTGATGCTCTTTCTATCTACGAGCGTGTGTTGGAGAGTGATGGTGCGAATGTAGAGGCGCTGATTGGAAAAGGAATATGCCTTCAGATGCAGAATAAGGGAAGGCTTGCGTACGAGAGTTTTTCTGAGGCTATCAAGGTGGATCCTCAAAATGCTTGCGCTCTCACGCATTGCGGTATTCTGCATAAGGACGAGGGTCGCCTTGTGGAGGCTGCTGAGTCATATCAGAAGGCTTTACAAGTGGATCCTTCATACAAAGCAGCTGCTGAATGCCTTGCCATTGTTTTAACAGATATTGGTACCAACATAAAGCTGGCAGGGAACACTCAGGATGGAATTCAAAAATATTTTGAAGCCCTCAAAGTAGATCCGCACTATGCTCCTGCATACTATAATCTTGGTGTGGTCTATTCTGAAATGATGCAATATGACACGGCCCTCAGTTTCTATGAAAAGGCTGCATCAGAGAGGCCTATCTATGCTGAAGCATATTGCAATATGGGTGTGATTTTTAAAAATCGTGGTGATTTGGAATCGGCTATAACTTGTTATGAGAGGTGTTTAACTGTTTCACCTAACTTCGAGATTGCAAAGAATAACATGGCTATAGCATTGACAGATTTGGGAACAAAGGTTAAATTGGAGGGGGACATCAACCAAGGTGTGACTTTGTATAAGAAAGCTTTGTATTACAACTGGCATTACGCTGATGCCATGTATAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCCATTGTATTCTATGAACTTGCCTTTCACTTCAATCCGCATTGTGCGGAAGCCTGTAACAATCTCGGAGTTATATATAAAGATCGTGAAAACCTTGATAAAGCTGTAGAATGCTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCCCAGTCATTAAATAACCTTGGTGTTGTATACACTGTCCAGGGTAAAGTGGATGCTGCTGCAAGTATGATTGAGAAAGCTATTATTGCAAATCCAACATATGCAGAGGCATACAACAACCTAGGAGTTCTTTATAGGGATGCTGGTGATATAGCTCGAGCAATTAATGCTTATGAGCAATGCCTTAAGATTGATCCTGATTCTAGAAATGCTGGCCAGAATCGCTTGCTTGCAATGAATTACATAGAGGAAGGACATGATGACACACTTTTTGAGGTTCACAGGGACTGGGGTAGGCGATTCATGAGACTATATCCACAGTACACATCATGGGACAACTCAAAAGATCCTGAACGGCCCCTGGTGATAGGCTATGTATCTCCTGATTATTTTACTCATTCTGTGTCATATTTCATAGAGACACCCCTTGTCTATCATGACTACTCCAATTTCAAAGTGATTGTTTATTCAGCAGTTGTCAAGGCAGATTCAAAAACCATTAGATTTAGAGAGAAAGTTTTAAATAAGGGAGGTATCTGGAAAGATATTTATGGAATTGATGAAAAGAGGGTTGCCAACATGGTTAGAGAAGATCAAGTTGATATTTTGGTAGAACTTACTGGACATACTGCAAGCAATAAATTGGGAATGATGGCATGTCGACCTGCACCGATTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTACAATTGATTATAGAATCACTGATTCACTGGCAGACCCTCCTGAAACAAAGCAGAAGCATGTTGAGGAGTTAGTTAGATTGCCAGAATGCTTCCTTTGTTACACCCCTTCCCCGGAGGCTGGCCCTATTTGTCCAACTCCTGCTCTTTCCAATGGTTTTGTCACATTTGGTAGTTTCAACAATCTTGCCAAGATTACACCAAAGGTATTGCAGGTTTGGGCAAGGATACTGTGTGCAATTCCGAATTCCCGCCTTGTGGTAAAATGTAAACCTTTTTGCAGTGACAGTGTGCGACAGAGATTCCTTTCAACACTAGAGCAGTTAGGTTTAGAACCACTACGTGTTGATCTTCTGCCCCTTATTCTTCTTAACCATGATCATATGCAAGCCTATTCTCTGATGGACATCAGTTTGGATACATTTCCATATGCTGGAACAACAACAACATGTGAATCTTTATACATGGGAGTTCCATGTGTCACTATGGCTGGATCAGTACATGCACACAACGTTGGTGTTAGTCTTCTTAGCAAAGTTGGACTGGAGCATTTGATTGCCAGAAATGAAGATGAATATGTTGAATTGGCTCAGCAGTTGGCCTCTGACATTTCCGCACTACAAAATTTGAGAATGAGTCTGCGAAATCTCATGTCCAAGTCCCCTCTCTGTGATGGTGCAAAATTTATCCTAGGTTTGGAGTCAACATACAGAAAAATGTGGCACCGGTATTGTAGAGGAGATGTTCCATCTTTAAAACGCTTGGAATTGTTACAAGAAGTTGCTACTGGTGACCTGTCAAATAAGAATTCTGAGCCAACAAGGATTGCAAACTCAAGGGAGGACAGTCCTGGGTCTGTCAAGGCCAATGGATATAATACAATTCCTGCATCAAAGCTTAACATACACACTCGCGAAGAAAACGATGGGTCATCAAATCACAGTAGTAAACAAGGAAAGATGAGTTGA 2760 0.4203 MAGADINSDGNGSERELAGNSYNGFAEAPEASVSASGCEGNDSVSYANVLRSRNKFVDALSIYERVLESDGANVEALIGKGICLQMQNKGRLAYESFSEAIKVDPQNACALTHCGILHKDEGRLVEAAESYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQDGIQKYFEALKVDPHYAPAYYNLGVVYSEMMQYDTALSFYEKAASERPIYAEAYCNMGVIFKNRGDLESAITCYERCLTVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVTLYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIARAINAYEQCLKIDPDSRNAGQNRLLAMNYIEEGHDDTLFEVHRDWGRRFMRLYPQYTSWDNSKDPERPLVIGYVSPDYFTHSVSYFIETPLVYHDYSNFKVIVYSAVVKADSKTIRFREKVLNKGGIWKDIYGIDEKRVANMVREDQVDILVELTGHTASNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSPEAGPICPTPALSNGFVTFGSFNNLAKITPKVLQVWARILCAIPNSRLVVKCKPFCSDSVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLEHLIARNEDEYVELAQQLASDISALQNLRMSLRNLMSKSPLCDGAKFILGLESTYRKMWHRYCRGDVPSLKRLELLQEVATGDLSNKNSEPTRIANSREDSPGSVKANGYNTIPASKLNIHTREENDGSSNHSSKQGKMS* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1665 919 SUPERFAMILY TPR-like 211 430 IPR011990 GO:0005515
Gso3g1665 919 Pfam Tetratricopeptide repeat 183 213 IPR001440 GO:0005515
Gso3g1665 919 Pfam Tetratricopeptide repeat 326 359 IPR001440 GO:0005515
Gso3g1665 919 Pfam Tetratricopeptide repeat 394 426 IPR001440 GO:0005515
Gso3g1665 919 Pfam Tetratricopeptide repeat 217 250 IPR001440 GO:0005515
Gso3g1665 919 ProSiteProfiles TPR repeat profile. 360 393 IPR019734 GO:0005515
Gso3g1665 919 Gene3D Glycogen Phosphorylase B; 636 821 - -
Gso3g1665 919 Pfam Glycosyl transferase family 41 647 826 IPR029489 -
Gso3g1665 919 Pfam Glycosyl transferase family 41 468 630 IPR029489 -
Gso3g1665 919 ProSiteProfiles TPR repeat profile. 108 141 IPR019734 GO:0005515
Gso3g1665 919 ProSiteProfiles TPR repeat region circular profile. 394 426 - -
Gso3g1665 919 MobiDBLite consensus disorder prediction 863 919 - -
Gso3g1665 919 ProSiteProfiles TPR repeat profile. 394 427 IPR019734 GO:0005515
Gso3g1665 919 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 33 853 - -
Gso3g1665 919 Gene3D Tetratricopeptide repeat domain 294 364 IPR011990 GO:0005515
Gso3g1665 919 Gene3D Tetratricopeptide repeat domain 154 219 IPR011990 GO:0005515
Gso3g1665 919 SMART tpr_5 258 291 IPR019734 GO:0005515
Gso3g1665 919 SMART tpr_5 108 141 IPR019734 GO:0005515
Gso3g1665 919 SMART tpr_5 326 359 IPR019734 GO:0005515
Gso3g1665 919 SMART tpr_5 149 182 IPR019734 GO:0005515
Gso3g1665 919 SMART tpr_5 360 393 IPR019734 GO:0005515
Gso3g1665 919 SMART tpr_5 40 73 IPR019734 GO:0005515
Gso3g1665 919 SMART tpr_5 74 107 IPR019734 GO:0005515
Gso3g1665 919 SMART tpr_5 183 216 IPR019734 GO:0005515
Gso3g1665 919 SMART tpr_5 394 427 IPR019734 GO:0005515
Gso3g1665 919 SMART tpr_5 217 250 IPR019734 GO:0005515
Gso3g1665 919 SMART tpr_5 292 325 IPR019734 GO:0005515
Gso3g1665 919 ProSiteProfiles TPR repeat profile. 74 107 IPR019734 GO:0005515
Gso3g1665 919 MobiDBLite consensus disorder prediction 863 898 - -
Gso3g1665 919 MobiDBLite consensus disorder prediction 1 20 - -
Gso3g1665 919 ProSiteProfiles TPR repeat region circular profile. 183 214 - -
Gso3g1665 919 ProSiteProfiles TPR repeat profile. 217 250 IPR019734 GO:0005515
Gso3g1665 919 Gene3D Tetratricopeptide repeat domain 39 153 IPR011990 GO:0005515
Gso3g1665 919 ProSiteProfiles TPR repeat profile. 326 359 IPR019734 GO:0005515
Gso3g1665 919 ProSiteProfiles TPR repeat profile. 183 216 IPR019734 GO:0005515
Gso3g1665 919 Gene3D - 464 635 - -
Gso3g1665 919 ProSiteProfiles TPR repeat region circular profile. 217 249 - -
Gso3g1665 919 SUPERFAMILY TPR-like 339 794 IPR011990 GO:0005515
Gso3g1665 919 Gene3D Tetratricopeptide repeat domain 365 451 IPR011990 GO:0005515
Gso3g1665 919 Gene3D Tetratricopeptide repeat domain 220 293 IPR011990 GO:0005515
Gso3g1665 919 SMART sel1 292 323 IPR006597 -
Gso3g1665 919 SMART sel1 183 214 IPR006597 -
Gso3g1665 919 SMART sel1 326 357 IPR006597 -
Gso3g1665 919 SMART sel1 394 425 IPR006597 -
Gso3g1665 919 Pfam Tetratricopeptide repeat 362 387 - -
Gso3g1665 919 SUPERFAMILY TPR-like 44 266 IPR011990 GO:0005515
Gso3g1665 919 ProSiteProfiles TPR repeat region circular profile. 326 358 - -
Gso3g1665 919 ProSiteProfiles TPR repeat profile. 292 325 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1665 Gso-Chr3 42551919 42565167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1665 198 895 Glycosyltransferase AT3G11540 63.766 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1665 K09667 - gmx:100785784 1844.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1665 3 42551919 42565167 Gso3g1665 3 42551919 42565167 ECH