Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1645 ATGGCGATGAAGAAGTTGGCGTTGGTGAAAGTGAAAGCCCCTTGTTGTCCTCTCCCCTCCCCACCAGCACCAGGAGACACAGCCGTCTCCCCCGTCCACTACGCCCGCTTCCTGGACTTCCTGAAATCCCACTGGGCCCCACCTTTCACCCCGGACACCCTCCTCCACTTTTTGAAATCCAAGCTCCATCACCACCCTTCCTTCTCCCACTTCGACTTCCACCTCTTCACATGGGCCTCCTCCTCCCTCGACTCTTTCCGCCACACCCACCTCACCTTCCACTGGATGGCCCGCTCCCTCGCCTCCACCCACCGCCTCCCCCAACTCCGCACCCTCCTCCACCTCATCTCCTCCAACCCCTGCCCCTGCTCCCCCTCCATCTTCTCCTGCCCCCAAACCCAACCCATCTTCTCCCTCTCCATCCACGCCTTCTCCAAATCCAATCTCCTCAACGACGCCGTTTCCGCTTTCCACTCCATGTGCAAACTAATCGACGGCAAGCCCAACGTCGCCGTCTGTAACCTCCTCATCCACGCCTTCGTTAAACGCGGCTCCCTCAACGCCGCTCTCCAGTTTTACCGCGAGATGGTGCTAAAACACAGGGTTAAGCCCGATGTTTTCACCTTTAACATTTTGATTAGTGGTTATTGTAGAAACTCGCAGTTTAACTTGGCGTTGGAGATGTTTCACGAGATGGGGAAAATGGGATGTTTACCCAATGTGGTTACTTTTAATACGTTGATTAAGGGTTTGTTTAGGGAAGGGAACGTTGAGGAAGCCATTGGGATGGCTCGTGAGATGGTTCAATTAGGGATTCGATTTTCGAGTGTTAGTTGTGAGATTTTGGTTCAGGGGCTTTGCAAGGAAGGGAGGGTTTTGCAGGCGTGTGAGTTGTTGCTGGAGTTTTGTGAGAAGAAGGTTTTGCCCGAAGGGTTTGATTGTTTTGCGTTGCTGGAGGTTTTGTGTGGGGAAGGGTATGCTATGAGAGCGTTGGAGGTTGTTTATGAGCTGTGGAATGGGGGTAGTGTTCCGAGTTTGGTTGCTTGTATTGTCATGGTTGATGGGTTGAGAGGGTTGGGGAAGATTGACGAGGCGAGGAGATTGGTGGAAAGGATGCTTGAAGAGGGTTTGGTGCTGGATGTTGTGACTTTCAACTGTGTTCTTCGGGATATTTGTGATAAGCGGAGAACGAATGAGGCGAATAGATTGAGGTTGCTTGCTTCAAGCAAGGGTTTTGAACCAGATGAGATGACGTATAGGATTTTGGTCATGGGGTATATAGGGGAGGGAGGGAGAGAGCAAGGAGAGTTGCTGGTGGATGAGATGTTGGATATGGGGTTTATACCTGATCTTGCTTCATATAATCAATTGATGAGTGGATTGTCGAATTGCCGACGCCCTACACGCCGTCAAGTAAGCAAATTTGATCAATGA 1434 0.5126 MAMKKLALVKVKAPCCPLPSPPAPGDTAVSPVHYARFLDFLKSHWAPPFTPDTLLHFLKSKLHHHPSFSHFDFHLFTWASSSLDSFRHTHLTFHWMARSLASTHRLPQLRTLLHLISSNPCPCSPSIFSCPQTQPIFSLSIHAFSKSNLLNDAVSAFHSMCKLIDGKPNVAVCNLLIHAFVKRGSLNAALQFYREMVLKHRVKPDVFTFNILISGYCRNSQFNLALEMFHEMGKMGCLPNVVTFNTLIKGLFREGNVEEAIGMAREMVQLGIRFSSVSCEILVQGLCKEGRVLQACELLLEFCEKKVLPEGFDCFALLEVLCGEGYAMRALEVVYELWNGGSVPSLVACIVMVDGLRGLGKIDEARRLVERMLEEGLVLDVVTFNCVLRDICDKRRTNEANRLRLLASSKGFEPDEMTYRILVMGYIGEGGREQGELLVDEMLDMGFIPDLASYNQLMSGLSNCRRPTRRQVSKFDQ* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1645 477 Pfam PPR repeat 172 197 IPR002885 -
Gso3g1645 477 Pfam PPR repeat 278 306 IPR002885 -
Gso3g1645 477 Pfam PPR repeat 351 377 IPR002885 -
Gso3g1645 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Gso3g1645 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Gso3g1645 477 TIGRFAM PPR: pentatricopeptide repeat domain 277 309 IPR002885 -
Gso3g1645 477 TIGRFAM PPR: pentatricopeptide repeat domain 242 273 IPR002885 -
Gso3g1645 477 TIGRFAM PPR: pentatricopeptide repeat domain 349 381 IPR002885 -
Gso3g1645 477 TIGRFAM PPR: pentatricopeptide repeat domain 207 241 IPR002885 -
Gso3g1645 477 TIGRFAM PPR: pentatricopeptide repeat domain 172 206 IPR002885 -
Gso3g1645 477 Gene3D Tetratricopeptide repeat domain 312 473 IPR011990 GO:0005515
Gso3g1645 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Gso3g1645 477 Gene3D Tetratricopeptide repeat domain 199 311 IPR011990 GO:0005515
Gso3g1645 477 Pfam PPR repeat family 204 252 IPR002885 -
Gso3g1645 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Gso3g1645 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Gso3g1645 477 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 26 466 - -
Gso3g1645 477 Gene3D Tetratricopeptide repeat domain 53 198 IPR011990 GO:0005515
Gso3g1645 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 204 IPR002885 -
Gso3g1645 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Gso3g1645 477 SUPERFAMILY HCP-like 150 300 - -
Gso3g1645 477 PANTHER ATPASE EXPRESSION PROTEIN 3 26 466 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1645 136 477 Glycosyltransferase AT1G05670 28.363 1.63e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1645 - - gmx:100796880 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1645 3 42402753 42406223 Gso3g1645 3 42402753 42406223 ECH