Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1620 ATGGCATCCAATTCAACAAGTTATAGGGCAATGAGGACGACATCTTCATCTAAAGACATATTAATCCAAGAGGATAATGAACAAGATCTCAAATGGGATAAAATCCAACGTTTTCCTATGTTTGATCGCTTGAGAAAAGGGATGCTGAGGCTTGTGCTTGATAGGGGAAATGTTGTGCCTTACCAAGTTGTTGATGTTACCAATCAAGGGTTGCAGGACAAGAAGCTATTACTAGAGAGTGTACTAAAAGATGACAATGAGAAATTCCTACGTAAATTTAGAGAAAGAGTTGATAGGGTGGGGATTGAAATTCCAAAAATTGAAGTTCGATTTGAGAATTTATCTGTAGAGGGAGATGTGCATGTTGGAAGGAGAGCCCTTCCTACCCTACATAATGTTACTCTCAACGCTTTTGAGAGGATTCTGGGGATGTTTCAGTTCGCATCTTTCAGGAAGAGAAAAAATCATATTCTCAAAGATGTCAGTGGAATTGTCAAACCATCAAGGATGACCCTACTTCTGGGTCCTCCAGGTGCAGGGAAAACAACATTGCTTCTAGCACTTGCAGAAAAGCTTGATCGGGATTTGAGGGCTTTCGGGAGAGTGACTTATTGTGGCCATGACTTAAATGAATTTGTTGCTAAAAAAACTTGTGCCTATATTAGTCAACATGACCTTCATCATGGAGAAATGACGGTGAGAGAGACTTTGGACTTTTCAGCACATTGTCTAGGTGTTGGCACGAGGTATGAGATGTTGAAGGAAATCTCAAGAAGGGAGAGAGAAGCAGGAATTAAGCCAGACCCTGAGATTGTTGCATTCATGAAGGGTATTGCTATATCGGGCCAAAAAAACAATTTGATAACCGATTATATCATCAAGATACTTGGATTGGATATTTGTGCGGACATAAAGGTTGGTGATAACATGAGAAGGGGTATCTCTGGTGGACAAAAGAAGCGTGTCACAACAGGTGAGATGCTAGTTGGACCAGCAAAGGTATTTTTCATGGATGAAATATCAACAGGATTAGACAGTTCCACAACTTTCCAAATATGCAAGTTCTTGAGGCAGATGATTCATACAATGGAAGTAACAATGTTGATTTCTCTTCTACAACCAGCACCAGAGACATATGAACTATTTGATGATATTATCCTACTTTCAGAAGGTCAAATTGTATACCAAGGTCCACGTGAACATGTGCTAGAGTTCTTCGAAAACATGGGATTCAAATGTCCTGAAAGAAAAGGAGTTGCTGACTTTTTACAAGAAGTAACGTCTAAGAAAGACCAACAACAATATTGGTCTCGTAGAAATGAACCTTATAGATATGTTTCAGTTCCTGAATTTGCAGGTTCTTTCCATTTGTTTTACGTAGGAAAGAAACTTGCATCAGAGATTAAGGTTCCTTACGATAAGAGCCAAACCAATGAAGCTGCCTTAGTGAAAAAAAAGTATGGTATATCAAATTGGGAACTACTAAAGGCATGTTTCTCAAGAGAATGGTTGTTTATGAAACGTGACATATTTGTTTACATATATAGGATAGTACATTTAACTGTCCTATCTATTTTAGGCTTCACTGTGTTCTTTAGAACCGAAATGCCAGTTGGTACTGTTGAAAATGGACAAAAGTTCTATGGAGCACTATTTTTTACTTTATTCAATATGATGTTTAATGGGTCTTCAGAACAAGCCATGATTGTTTCAAGGCTTCCTGTCTTTTACAAGCAAAGGGATTTTATGTTCTACCCTGCATGGGCGTTTGCTTTACCTGTATGGATTCTCAGGATCCCCATTTCCTTTCTAGAATCAGGGATATGGATTGCCCTGACATACTACACAACTGGATTTGCTCCTTCAAGTAGCAGATTTTTCCGGCACTTCTTGGCATTATTTGGTATTCATCAGATGTCTCTATCTCTGTATCGACTCATTGGTGCAACTGGTAGAACACACGTTGTTGCCAATATTTTGTGCGGCTTGATTTGTCAAGTAATATTTGTGCTTGGAGGATCTATTGTCGCCAAAAATAATATTAAGCCATGGATGATATGGGGCTATTACATTTCTCCTATGATGTATGGCCAGAATGCCATAGTAATAAATGAATTTTTAGATGAAAGATGGAGTCAACCAAATACAGACCCTAGAATTGGTGCAACTACAGTTGGAAAGGTGCTTCTTAAGTCTAAAGGTTTTTTTACTGAAGAGTATTGGTTTTGGATATGCATTGGAGCCTTGTTTGGATTTGCTCTTCTTTTCAACCTTCTCTTCATTGTTGCATTGACTTATTTGAATCCTTTCAGTGATTCATCAAAAGCATTCATCATGGATGATGATGACAAGAAGAATAAAAAGTCAACAAATAAACACCGTATCATTGAAGTAGGTCCATGTATAGACATAGCAGTGAAAAAATCTTCAGAACTTGTTGGTTGTCCTGATCAAGAACGAAGAACAAGAATGATCCTTCCATTTCAACCTCTTTCCCTTTCATTCAGTCACGTGAACTATTATGTAGATATGCCTTCTGAAATGAAAAATCAAGGAATCAATGAAGATAGACTTCAACTTCTGCGTGATGTCAGTGGTGCATTCAGGCCAGGCATATTGACAGCACTTATGGGTGTTAGTGGTGCTGGCAAGACAACCCTTTTGGATGTGTTAGTTGGGAGAAAAACAGGTGGATACATTGAAGGTAGTATTAGCATCTCAGGTCACCTAAAGAACCAAGCAACATATGCTCGAGTTAGTGGATACTGTGAACAAAATGATATTCATTCTCCCTATGTTACTGTATACGAGTCATTATTATTTTCAGCATGGCTTCGCCTTCCATCACATGTAAATACACAAACACGAAAGATGTTTGTTGAAGAGGTTATGGAATGGGTTGAGCTTAAACCAATCAAAGATGCACTTGTGGGTCTTCCAGGCATAGATGGTCTATCAACGGAACAAAGGAAAAGGCTTACTATTGCTGTAGAATTGGTTGCCAACCCTTCAATCATCTTGATGGATGAACCAACATCTGGCCTTGATGCTAGAGCTGCTGCTATTGTTATGCGAACTGTGAGAAAAACAGTAGATACGGGGAGAACTGTTGTGTGCACAATTCACCAACCAAGCATAGACATTTTCGAAGCTTTTGATGAGTTATTGCTGATGAAAAGAGGAGGACAAGTTATCTATGCTGGACCTCTTGGTCACCACTCACAGAAGCTCATAGAATATTTTGAAGCTATTGCAGGGATTCAAAAAATTAAAGATGGCTATAATCCTGCCACATGGATGCTTGACATCAGCACTCCTTCAATGGAGGCTCAACTTGACATAGATTTTGCAAAGATCTATGTTAACTCTACACTTTACCAAATGAATCAAGAGCTTATCAAAGAGCTTAGTACTCCCACACCAGGTTCCAAGGACTTATTCTTCCCAACCAAATATTCCCAATCATTCTTTGTGCAATGGAAAGCTTGTCTTTGGAAACAATATTGGTCATATTGGAGAAATCCTCCATATAATGGAATTCGATTCTTCTTCACATTAGCCTATGGTGTAATGTTTGGTCTAATTTTCTGGAAAAGAGCAGAAAATATCCAAAAACAGCAAGATTTATTTGATCTTTTGGGGGCCATGTTCTCTACTGTGATGTTCCTAGGAACCATGAACGCTGTGGGAGTGCAACCAGTTGTTGACATAGAAAGAACTGTACTCTATCGTGAAAGAGCAGCAGGGATGTATTCAGCATTGCCTTATGCGCTCGGTCAAGTGGTTATAGAGATAATGTACAGCTCAATTCAGACGGTCATGTACACTATCATCATTCATTCCATGATGGGATTTAAATGGAATGTTGGGAAATTCTTGTCGTTCTACTACTACATGCTGATGTGTTTTATTTACTTCACATTGTATGGGATGATGACTATTGCACTAACCCCGAGTTACCAAATTGCTTCCATTTGTATATCCTTTTTCTTGTGCATCTGGAACCTGTTCTCCGGCTTTTTCATTCCTAGGGTGGAAATCCCTGTATGGTGGAGATGGTTCTATTGGGCTACTCCTAATGCTTGGACGATATATGGACTTGTTACCTCTCAACTCGGCGATGAAATTGCACAAATAGATGTCCCAGGAGCAAAAAGTATGGGGCTGAAGGAACTCCTCAAAGAAAATATGGGTTTTGACTATGACTTCCTACCGGTGGTTGCTATTGTTCATGTAGGCTGGGTTATCATTTTCTTGTTTTTGTTTGTCTTTGGCGTGAAATTCCTGAACTTCCAAAAGAGATAG 4305 0.3902 MASNSTSYRAMRTTSSSKDILIQEDNEQDLKWDKIQRFPMFDRLRKGMLRLVLDRGNVVPYQVVDVTNQGLQDKKLLLESVLKDDNEKFLRKFRERVDRVGIEIPKIEVRFENLSVEGDVHVGRRALPTLHNVTLNAFERILGMFQFASFRKRKNHILKDVSGIVKPSRMTLLLGPPGAGKTTLLLALAEKLDRDLRAFGRVTYCGHDLNEFVAKKTCAYISQHDLHHGEMTVRETLDFSAHCLGVGTRYEMLKEISRREREAGIKPDPEIVAFMKGIAISGQKNNLITDYIIKILGLDICADIKVGDNMRRGISGGQKKRVTTGEMLVGPAKVFFMDEISTGLDSSTTFQICKFLRQMIHTMEVTMLISLLQPAPETYELFDDIILLSEGQIVYQGPREHVLEFFENMGFKCPERKGVADFLQEVTSKKDQQQYWSRRNEPYRYVSVPEFAGSFHLFYVGKKLASEIKVPYDKSQTNEAALVKKKYGISNWELLKACFSREWLFMKRDIFVYIYRIVHLTVLSILGFTVFFRTEMPVGTVENGQKFYGALFFTLFNMMFNGSSEQAMIVSRLPVFYKQRDFMFYPAWAFALPVWILRIPISFLESGIWIALTYYTTGFAPSSSRFFRHFLALFGIHQMSLSLYRLIGATGRTHVVANILCGLICQVIFVLGGSIVAKNNIKPWMIWGYYISPMMYGQNAIVINEFLDERWSQPNTDPRIGATTVGKVLLKSKGFFTEEYWFWICIGALFGFALLFNLLFIVALTYLNPFSDSSKAFIMDDDDKKNKKSTNKHRIIEVGPCIDIAVKKSSELVGCPDQERRTRMILPFQPLSLSFSHVNYYVDMPSEMKNQGINEDRLQLLRDVSGAFRPGILTALMGVSGAGKTTLLDVLVGRKTGGYIEGSISISGHLKNQATYARVSGYCEQNDIHSPYVTVYESLLFSAWLRLPSHVNTQTRKMFVEEVMEWVELKPIKDALVGLPGIDGLSTEQRKRLTIAVELVANPSIILMDEPTSGLDARAAAIVMRTVRKTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGHHSQKLIEYFEAIAGIQKIKDGYNPATWMLDISTPSMEAQLDIDFAKIYVNSTLYQMNQELIKELSTPTPGSKDLFFPTKYSQSFFVQWKACLWKQYWSYWRNPPYNGIRFFFTLAYGVMFGLIFWKRAENIQKQQDLFDLLGAMFSTVMFLGTMNAVGVQPVVDIERTVLYRERAAGMYSALPYALGQVVIEIMYSSIQTVMYTIIIHSMMGFKWNVGKFLSFYYYMLMCFIYFTLYGMMTIALTPSYQIASICISFFLCIWNLFSGFFIPRVEIPVWWRWFYWATPNAWTIYGLVTSQLGDEIAQIDVPGAKSMGLKELLKENMGFDYDFLPVVAIVHVGWVIIFLFLFVFGVKFLNFQKR* 1435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1620 1434 Pfam ABC-transporter N-terminal 84 133 IPR029481 -
Gso3g1620 1434 Pfam ABC transporter 861 1013 IPR003439 GO:0005524
Gso3g1620 1434 Pfam ABC transporter 158 340 IPR003439 GO:0005524
Gso3g1620 1434 Pfam ABC-2 type transporter 373 445 IPR043926 GO:0140359
Gso3g1620 1434 Pfam ABC-2 type transporter 1042 1106 IPR043926 GO:0140359
Gso3g1620 1434 Gene3D - 144 446 IPR027417 -
Gso3g1620 1434 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 139 415 IPR003439 GO:0005524
Gso3g1620 1434 CDD ABCG_PDR_domain2 830 1068 IPR034003 -
Gso3g1620 1434 Pfam ABC-2 type transporter 1159 1371 IPR013525 GO:0016020|GO:0140359
Gso3g1620 1434 Pfam ABC-2 type transporter 494 706 IPR013525 GO:0016020|GO:0140359
Gso3g1620 1434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 415 IPR027417 -
Gso3g1620 1434 PANTHER ATP-BINDING CASSETTE TRANSPORTER 18 1434 - -
Gso3g1620 1434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 852 1071 IPR027417 -
Gso3g1620 1434 PANTHER ABC TRANSPORTER G FAMILY MEMBER 34-RELATED 18 1434 - -
Gso3g1620 1434 SMART AAA_5 870 1062 IPR003593 -
Gso3g1620 1434 SMART AAA_5 167 392 IPR003593 -
Gso3g1620 1434 Pfam Plant PDR ABC transporter associated 711 774 IPR013581 -
Gso3g1620 1434 Gene3D - 847 1084 IPR027417 -
Gso3g1620 1434 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 833 1085 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1620 Gso-Chr3 42173002 42182746 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1620 K08711 - gmx:100791069 2836.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1620 3 42173002 42182746 Gso3g1620 3 42173002 42182746 ECH