Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1618 ATGGTTTACACCATCTCGGGAATTCGATTTCCGGTTTTTCCTTCGCTGCACAACTTGAGCTTCCGTGGCGATCGCAGAACTGCGTCTCTTCCCGTTTTTCTCCGAAACAACTCCTTCTCTCGGAAAACCCTTGCTGTAAAATCTTCCCATGATTCTGATTCCTTGTCTTCTGCGATTGCCGAATCTGATAAAGTACTTATTCCTCAAGATCAAGATAACTCTGCATCCTTGACAGATCAACTTGAAACTCCTGATATAACCTCAGAGGATGCACAGAATTTAGAGGATTTAACCATGGAAGATGAGGATAAATACAACATTAGTGAAGCAGCTAGCGGTTACAGACAGATTGAAGATGGACAGGGCTCTGTTGTATCATCACTTGTAGATGTGAGCATTCCGGCCAAGAAGATGTCGGTATCTGTTGGTAGGAAAGCAAAGATAGTAAGTGATGAAGTTAAACCTAAGATCATTCCCCCACCTGGCGCTGGGCAGAAAATATATGAGATAGATCCATCTTTGCTAGCTCACCGTGAGCATCTTGATTTCCGTTATGGACAATACAAAAGATTGCGTTATGAAATTGACAAGCATGAAGGCGGTCTGGATACATTTTCACGTGGTTATGAAAAATTTGGCTTCCAACGCAGTGCTACAGGCATTACTTACAGAGAGTGGGCACCTGGAGCTAAGTCGGCAGCATTAATTGGAGACTTCAACAATTGGAATCCAAATGCAGATGTAATGACCAAGAATGAATTTGGTGTGTGGGAGATCTTCTTGCCGAACAATGTGGATGGTTCACCACCAATTCCTCATGGTTCTCGGGTCAAGATCCGCATGGATACGCCCTCTGGAATCAAGGACTCAATTCCTGCTTGGATTAAGTTTTCTGTACAGGCACCTGGTGAAATTCCATATAGCGGAATATACTATGATCCCCCAGAAGAGGAAAAATATGTCTTCAAACATCCACTGCCAAAGAGACCAAAATCACTTAGAATATATGAGTCACACATCGGAATGAGTAGTCCGGAGCCAAAAATCAACACATATGTCAATTTTAGAGATGATGTATTGCCTCGAATTAAAAGGCTTGGCTATAATGCTGTCCAGATTATGGCTATCCAAGAACATTCTTATTATGCAAGCTTTGGGTACCATGTTACAAATTTCTTCGCACCTAGCAGCAGATTTGGAACTCCAGAGGAACTTAAGTCTCTGATAGACAGAGCCCATGAACTGGGTCTGCTTGTTCTGATGGATATTGTACACAGCCATGCATCAAATAATACATTGGATGGGCTGAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGGTCACGAGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTACGGAAGCTGGGAAGTTCTAAGGTATCTACTCTCGAATTCAAGATGGTGGCTGGATGAATACAAGTTTGATGGATTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGGAGGTAGCATTTACTGGAAATTACAATGAGTATTTTGGTTTTGCAACTGATGTTGATGCTGTGATTTACCTGATGCTGACTAATGATGTCATTCATGGGCTGTTCCCTGAGGCTGTTACAATTGGTGAAGATGTGAGTGGAATGCCAACATTCTGCCTTCCTACGCAAGATGGTGGGGTTGGCTTTGATTATCGCCTGCACATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAGAAGAATGATGAAGACTGGAAAATGGGTGATATTGTCCACACATTAACAAACAGAAGGTGGCTGGAAAAATGTGTAGCTTATGCTGAAAGTCATGACCAGGCCTTGGTTGGTGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCTTTAGACAGACCATCCACACCTATTATAGATCGTGGTATAGCGTTGCACAAAATGATTAGGCTTATTACCATGGGTCTTGGTGGTGAAGGGTATTTGAATTTTATGGGGAATGAATTTGGCCATCCTGAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGTAATAGTTCCAGGGAATAACAACAGTTTTGATAAATGCAGGCGTAGATTTGACTTGGGTGATGCGGACTATCTAAGATATCGAGGGATGCAAGAATTTGATCAGGCCATGCAGCATCTAGAAGAAAAGTTTGGTTTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAATTATAGTCTTCGAAAGGGGCAACCTCATCTTTGTCTTCAATTTTCATTGGAACAACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAGATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAATCACACTGCTGAGTACTTCACCTCAGAAGGATGGTATGATGACCGACCTCGATCCTTTCTTATCTATGCACCTTCTAGAACAGCAGTGGTTTATGCCCTTGCAGATGATGTTGAACCTACCCTAGCAGATGAAGCTGAACCTGCCCTAGCAGATGAAGCTGAACCAGAGCCAGTTGATCCTTGA 2613 0.4256 MVYTISGIRFPVFPSLHNLSFRGDRRTASLPVFLRNNSFSRKTLAVKSSHDSDSLSSAIAESDKVLIPQDQDNSASLTDQLETPDITSEDAQNLEDLTMEDEDKYNISEAASGYRQIEDGQGSVVSSLVDVSIPAKKMSVSVGRKAKIVSDEVKPKIIPPPGAGQKIYEIDPSLLAHREHLDFRYGQYKRLRYEIDKHEGGLDTFSRGYEKFGFQRSATGITYREWAPGAKSAALIGDFNNWNPNADVMTKNEFGVWEIFLPNNVDGSPPIPHGSRVKIRMDTPSGIKDSIPAWIKFSVQAPGEIPYSGIYYDPPEEEKYVFKHPLPKRPKSLRIYESHIGMSSPEPKINTYVNFRDDVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEELKSLIDRAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDGHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNSRWWLDEYKFDGFRFDGVTSMMYTHHGLEVAFTGNYNEYFGFATDVDAVIYLMLTNDVIHGLFPEAVTIGEDVSGMPTFCLPTQDGGVGFDYRLHMAIADKWIEILKKNDEDWKMGDIVHTLTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPIIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPTGVIVPGNNNSFDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEEKFGFMTAEHQYISRKNEGDKIIVFERGNLIFVFNFHWNNSYSDYRVGCSTPGKYKIVLDSDDALFGGFSRLNHTAEYFTSEGWYDDRPRSFLIYAPSRTAVVYALADDVEPTLADEAEPALADEAEPEPVDP* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1618 870 Pfam Alpha amylase, catalytic domain 360 433 IPR006047 GO:0005975
Gso3g1618 870 SUPERFAMILY (Trans)glycosidases 323 738 IPR017853 -
Gso3g1618 870 Gene3D Immunoglobulins 207 319 IPR013783 -
Gso3g1618 870 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 20 848 IPR037439 GO:0003844|GO:0005978
Gso3g1618 870 Gene3D - 745 850 IPR013780 -
Gso3g1618 870 Pfam Alpha amylase, C-terminal all-beta domain 749 842 IPR006048 GO:0003824|GO:0005975|GO:0043169
Gso3g1618 870 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 2-1, CHLOROPLASTIC/AMYLOPLASTIC 20 848 - -
Gso3g1618 870 CDD E_set_GBE_euk_N 219 312 - -
Gso3g1618 870 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 211 294 IPR004193 GO:0004553|GO:0005975
Gso3g1618 870 Gene3D Glycosidases 171 740 - -
Gso3g1618 870 SMART aamy 350 710 IPR006047 GO:0005975
Gso3g1618 870 SUPERFAMILY E set domains 205 314 IPR014756 -
Gso3g1618 870 SUPERFAMILY Glycosyl hydrolase domain 746 844 - -
Gso3g1618 870 CDD AmyAc_bac_euk_BE 316 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1618 Gso-Chr3 42140270 42157735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1618 27 845 Glycoside Hydrolase AT5G03650 74.969 0.0 1298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1618 K00700 - gmx:100816963 1756.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1618 3 42140270 42157735 Gso3g1618 3 42140270 42157735 ECH
Gso19g1598 19 44943690 44962449 Gso3g1618 3 42140270 42157735 GST