Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1602 ATGGCGGAGCACTTGGCATCGATATTCGGGACGGAGAAGGACAGGGTGAACTGTCCGTTCTACTTCAAGATCGGCGCGTGCAGGCACGGCGACCGGTGCTCCCGGCTTCACACCAAGCCGACAATTAGCCCAACATTGGTTCTGTCGAACATGTACCAGAGGCCCGACATGAACATGAACATCATCACCAACCCCGATCAGCCACAACCCCAATCCCTTGACCCCGACAAGGTGCAGGATCACTTCGACGACTTCTACGAAGATCTCTTCGAGGAGCTCAGCAAGTACGGCCCCATTCAGAGCTTGAATATTTGTGACAACCTCGCCGATCACATGGTTGGGAATGTGTATGTTCAGTTTAGGGAGGAAGATCATGCTGCCAACGCCCTCATGAATCTCACTGGGAGGTTTTATTCAGGTCGTCCCATCATTGTTGACTTCTCTCCCGTTACGGATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTATGCAATAGAGGTGGCTATTGCAACTTCATGCACCTAAAGAAGATCAGCAGGGATTTGAGAAGGAAATTATTTGGAAGAAATAGGCGATGGAATGGCCGCAGTGGAAGCAGAAGCAGGAGCCCTCCAAGGAATCGTAACCATGGGGAGAATTCACATTCTGGTCGTGGTTCTGGTAGAAGAGATTTTGACAGGTCCCATGGCCCCCATGGTAGGAGGCCTAGAAGCCGTAGTCCTCGGTATAGAGGAAAACGAAGTAGAAGTCCAGTGGGCAGAGATAGGAGTCCTCCGATCAGAGAAAGTAGTGCAGAAAGGAGAGCTAAAATAGAGCAATGGAACAGGGAGAAGGAACAAGGGGACACTGGTAACATGAACAATTCGAAAAGCAGTGATGATTATCAAGAACAGAGTGTTGCACAAAATGGTAGTGAATCTGGTAACCATCAGATATAG 945 0.491 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNMNIITNPDQPQPQSLDPDKVQDHFDDFYEDLFEELSKYGPIQSLNICDNLADHMVGNVYVQFREEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRRKLFGRNRRWNGRSGSRSRSPPRNRNHGENSHSGRGSGRRDFDRSHGPHGRRPRSRSPRYRGKRSRSPVGRDRSPPIRESSAERRAKIEQWNREKEQGDTGNMNNSKSSDDYQEQSVAQNGSESGNHQI* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1602 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 143 IPR000504 GO:0003723
Gso3g1602 314 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 306 IPR009145 GO:0000398|GO:0003723|GO:0089701
Gso3g1602 314 SUPERFAMILY RNA-binding domain, RBD 81 153 IPR035979 GO:0003676
Gso3g1602 314 MobiDBLite consensus disorder prediction 191 314 - -
Gso3g1602 314 ProSiteProfiles Zinc finger C3H1-type profile. 152 179 IPR000571 GO:0046872
Gso3g1602 314 PANTHER RNA RECOGNITION MOTIF DOMAIN, EUKARYOTE-RELATED 1 306 - -
Gso3g1602 314 SMART rrm1_1 45 146 IPR000504 GO:0003723
Gso3g1602 314 MobiDBLite consensus disorder prediction 250 281 - -
Gso3g1602 314 CDD RRM_U2AF35B 44 149 - -
Gso3g1602 314 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Gso3g1602 314 MobiDBLite consensus disorder prediction 207 233 - -
Gso3g1602 314 Gene3D - 43 149 IPR012677 -
Gso3g1602 314 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Gso3g1602 314 SMART c3hfinal6 152 178 IPR000571 GO:0046872
Gso3g1602 314 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 177 IPR000571 GO:0046872
Gso3g1602 314 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Gso3g1602 314 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Gso3g1602 314 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Gso3g1602 314 PRINTS U2 auxiliary factor small subunit signature 79 94 IPR009145 GO:0000398|GO:0003723|GO:0089701
Gso3g1602 314 PRINTS U2 auxiliary factor small subunit signature 107 129 IPR009145 GO:0000398|GO:0003723|GO:0089701
Gso3g1602 314 PRINTS U2 auxiliary factor small subunit signature 134 158 IPR009145 GO:0000398|GO:0003723|GO:0089701
Gso3g1602 314 PRINTS U2 auxiliary factor small subunit signature 169 181 IPR009145 GO:0000398|GO:0003723|GO:0089701
Gso3g1602 314 MobiDBLite consensus disorder prediction 234 249 - -
Gso3g1602 314 SMART rrm2_1 71 146 IPR003954 GO:0003676
Gso3g1602 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 150 IPR000504 GO:0003723
Gso3g1602 314 MobiDBLite consensus disorder prediction 282 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1602 Gso-Chr3 41939661 41942297 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1602 K12836 - gmx:100811622 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1602 3 41939661 41942297 Gso3g1602 3 41939661 41942297 ECH
Gso19g1585 19 44751162 44753745 Gso3g1602 3 41939661 41942297 GST