Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1587 ATGGAGAGTGCAAATTGCTGTTACAGTAGAGGATATGGCATTATGGATAGATGGCAATGGCAATGGCAGGTAGGCCTCCACTGCAAATCCTTCTTCAACTCTTCCCTTTCTCCTCCATACTCCAAACCACCGTCCTCCCTCTCTCTCCGCCACAAACTCCGCCATGGCACCCACTACCTTCCCCCGGAGTCCCACTCCCTCCTCCACGCCCTCCACGTGTCCTCCCGCTCCGGCGACACCCACCTGGCCAAGACCGTCCACGCCACGCTCCTCAAACGCGACGAAGAAGACACCCATCTCTCCAACGCCCTCATCTCCACTTACCTCAAACTCAACCTCTTCCCCCACGCCCTCCGCCTCTTCCTCTCCCTCCCTTCCCCCAACGTCGTCTCCTACACCACCCTCATCTCCTTCCTCTCCAAGCACCGCCAGCACCACGCGCTCCATCTCTTCCTCCGCATGACCACTCGCTCCCACCTCCCCCCCAACGAGTACACCTACGTCGCCGTTTTAACCGCCTGCTCTTCACTCCTCCACCACTTCCATTTCGGCCTCCAGCTCCACGCCGCCGCACTCAAAACTGCTCACTTCGACTCCCCCTTCGTCGCCAACGCCCTCGTCTCTCTCTACGCCAAGCACGCCTCTTTCCACGCCGCGCTTAAACTCTTCAACCAAATACCACGCAGGGACATTGCTTCGTGGAACACCATCATCTCTGCTGCGCTTCAGGACTCCTTATACGACACCGCGTTTCGCTTGTTCCGTAACATGCAGGCCACGGACGCGTTTAGAGTCGATGACTTCACTTTATCCATACTTCTCACCGCGTCTGCGTCGTTGATGGAAGGTCAACAGGTTCACGCCCACGCTGTTAAGTTAGGGTTGGAAACCGATTTGAACGTTGGGAATGGACTCATTGGGTTTTACTCTAAATTTGGTAATGTTGATGACGTGGAGTGGTTGTTTGAGGGGATGAGAGTCAGGGATGTTATAACTTGGACTGAGATGGTCACAGCGTATATGGAGTTTGGGTTGGTCAATTTGGCCTTGAAGGTGTTCGATGAAATGCCAGAGAAGAATTCCGTGTCTTATAACACGGTTCTGGCTGGGTTCTGTCGAAACGAACAAGGTTTTGAGGCCATGAGGTTGTTTGTAAGAATGGTGGAGGAGGGTTTGGAGTTGACGGATTTTAGTTTGACTAGTGTTGTTGATGCTTGTGGATTGCTTGGTGATTACAAGGTCAGCAAGCAGGTTCATGGGTTTGCGGTGAAGTTTGGGTTTGGATCGAATGGTTATGTTGAGGCTGCATTGCTTGACATGTACACGAGGTGTGGGAGGATGGTGGATGCCGGTAAGATGTTTTTGAGATGGGAGTTGGAGGAGTTTAGCTCTGTGGTTTGGACGGCAATGATATGTGGCTATGCTCGGAATGGACAACCGGAGGAGGCGATTTATCTTTTCCACGTTGGTCGATCAGATGGCAAGGTGATTATGGATGAAGTTGCAGCGGCTTCAATGCTTGGTCTTTGTGGAACTATTGGTCATCTTGATATGGGTAAGCAAATCCATTGCCATGTGATTAAATGTGGATTGGGATTTAATTTGGAAGTCGGAAATGCAGTTGTTAGCATGTATTTTAAGTGTGGGAGTGTGGATGATGCAATGAAGGTTTTCGGTGATATGCCTTGTACTGATATAGTTACATGGAATACTTTGATTTCTGGCAATCTTATGCACAGACAGGGTGATAGAGCATTGGAAATATGGGTGGAGATGCTGGGGGAGGGCATAAAGCCTAACCAAGTTACATTTGTTTTGATCATTTCAGCTTACAGGCAAACTAACTTAAATTTGGTTGATGATTGCCGTAATTTGTTTAATTCAATGAGAACGGTTTATCAAATTGAGCCCACATCCAGGCATTATGCTTCCTTCATCAGTGTTTTGGGTCACTGGGGTCTTCTGCAAGAAGCACTAGAAACTATCAATAACATGCCTTTCCAGCCTTCTGCTCTTGTTTGGCGCGTTTTGCTTGATGGTTGTAGATTGCATAAGAATGAATTGATTGGAAAATGGGCTGCTCAGAATATTCTGGCCCTTGAACCTAAAGATCCTTCAACATTTATACTTGTTTCAAATTTGTATTCTGCTTCTGGGAGATGGGACCGCTCTGAAATGGTCAGGGAGGATATGAGAGAAAAGGGGTTTCGCAAACACCCAGCTCAAAGTTGGATCGTTTGTGAGAAGAAAATAAATTCATTTTATCCGAGAGATAGATCACATCCACAGGAGAAAGACATACAGAGAGGTTTGGAAATCCTGATCTTGGAGTGCCTAAAAATTGGATATGAACCTGACACGAGCTTTGTTCTCCATGAAGTAGAGGAGCATCACAAGAAAATTTTCCTATTCCATCACAGTGCTAAACTGGCAGCAACTTATGGGATACTGATGACCAAGCCTGGAAAGCCCATTCGGATTGTAAAGAATATCCTTCTTTGTGGGGACTGCCATGCATTCTTAAAATATGCATCTATTGTCACAAAGAGGGATATATTTCTGAGAGATTCTTCTGGATTTCATTGTTTCTCCAATGGCCAGTGCTCGTGTAAAGACTGCTGGTGA 2625 0.4762 MESANCCYSRGYGIMDRWQWQWQVGLHCKSFFNSSLSPPYSKPPSSLSLRHKLRHGTHYLPPESHSLLHALHVSSRSGDTHLAKTVHATLLKRDEEDTHLSNALISTYLKLNLFPHALRLFLSLPSPNVVSYTTLISFLSKHRQHHALHLFLRMTTRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPFVANALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTASASLMEGQQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLFHVGRSDGKVIMDEVAAASMLGLCGTIGHLDMGKQIHCHVIKCGLGFNLEVGNAVVSMYFKCGSVDDAMKVFGDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFVLIISAYRQTNLNLVDDCRNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQEALETINNMPFQPSALVWRVLLDGCRLHKNELIGKWAAQNILALEPKDPSTFILVSNLYSASGRWDRSEMVREDMREKGFRKHPAQSWIVCEKKINSFYPRDRSHPQEKDIQRGLEILILECLKIGYEPDTSFVLHEVEEHHKKIFLFHHSAKLAATYGILMTKPGKPIRIVKNILLCGDCHAFLKYASIVTKRDIFLRDSSGFHCFSNGQCSCKDCW* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1587 874 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 476 860 - -
Gso3g1587 874 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 394 484 - -
Gso3g1587 874 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 402 - -
Gso3g1587 874 Gene3D Tetratricopeptide repeat domain 486 615 IPR011990 GO:0005515
Gso3g1587 874 Pfam E motif 684 745 IPR046848 -
Gso3g1587 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Gso3g1587 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Gso3g1587 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 704 738 IPR002885 -
Gso3g1587 874 Pfam DYW family of nucleic acid deaminases 782 874 IPR032867 GO:0008270
Gso3g1587 874 Pfam PPR repeat family 230 276 IPR002885 -
Gso3g1587 874 Pfam PPR repeat family 359 406 IPR002885 -
Gso3g1587 874 Pfam PPR repeat family 127 175 IPR002885 -
Gso3g1587 874 Pfam PPR repeat family 565 611 IPR002885 -
Gso3g1587 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Gso3g1587 874 PANTHER OS07G0172600 PROTEIN 394 484 - -
Gso3g1587 874 PANTHER OS07G0172600 PROTEIN 476 860 - -
Gso3g1587 874 PANTHER OS07G0172600 PROTEIN 37 402 - -
Gso3g1587 874 Pfam PPR repeat 465 488 IPR002885 -
Gso3g1587 874 Pfam PPR repeat 539 561 IPR002885 -
Gso3g1587 874 Pfam PPR repeat 303 329 IPR002885 -
Gso3g1587 874 Gene3D Tetratricopeptide repeat domain 285 422 IPR011990 GO:0005515
Gso3g1587 874 Gene3D Tetratricopeptide repeat domain 616 746 IPR011990 GO:0005515
Gso3g1587 874 Gene3D Tetratricopeptide repeat domain 185 284 IPR011990 GO:0005515
Gso3g1587 874 Gene3D Tetratricopeptide repeat domain 48 181 IPR011990 GO:0005515
Gso3g1587 874 TIGRFAM PPR: pentatricopeptide repeat domain 465 488 IPR002885 -
Gso3g1587 874 TIGRFAM PPR: pentatricopeptide repeat domain 362 395 IPR002885 -
Gso3g1587 874 TIGRFAM PPR: pentatricopeptide repeat domain 567 600 IPR002885 -
Gso3g1587 874 TIGRFAM PPR: pentatricopeptide repeat domain 539 566 IPR002885 -
Gso3g1587 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 359 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1587 Gso-Chr3 41812478 41815500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1587 61 874 Glycoside Hydrolase AT3G49170 34.819 7.98e-149 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1587 - - gmx:100784704 1750.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1587 3 41812478 41815500 Gso3g1587 3 41812478 41815500 ECH