Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1566 ATGGCGGCAACCTCAACATCACTGGCTTCTCAACTCTACATTGGCCTGCGCCGCCCCTGCCTCAAGCTCGATTCTTTCAATTCTCAATCTTTCTCTCTCTTCGACCCTAATCTTCGCCTATCCCTCTCTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGTTCTTTGTTGGTGGCAACTGGAAGTGTAACGGAACAAAAGACTCAATCAGCAAGCTTGTCGCTGACTTGAACAATGCAAAACTGGAGCCTGATGTTGATGTTGTCGTCGCACCTCCCTTCCTCTACATCGATCAAGTGAAAAACTCACTCACTGAGCGGATTGAAATATCTGCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCCTTTACTGGAGAAATCAGTGCGGAACAATTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCTGAGCGAAGACATGTTATTGGAGAAAATGATGAGTTTATAGGGAAGAAAGCTGCCTATGCTTTGAGCCAAGGTCTTGGGGTGATTGCATGCATTGGAGAATTGTTAGAAGAAAGGGAGGCTGGAAAAACTTTTGATGTTTGTTTTCAGCAATTGAAGGCTTATGCAGACGCAGTTGCTAGTTGGGACAACATTGTTATTGCATATGAACCTGTATGGGCCATTGGAACGGGAAAAGTGGCCACTCCCCAACAAGCTCAGGAAGTACATGTAGCTGTTCGGGATTGGCTAAAAAAGAATGTCTCAGATGAAGTTGCGTCTAAAACACGAATTATTTATGGAGGGTCTGTAAATGGAGGCAACAGTGCTGAACTGGCAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCGGCTTAG 930 0.4591 MAATSTSLASQLYIGLRRPCLKLDSFNSQSFSLFDPNLRLSLSPPKPSRAVIAMAGTGKFFVGGNWKCNGTKDSISKLVADLNNAKLEPDVDVVVAPPFLYIDQVKNSLTERIEISAQNSWVGKGGAFTGEISAEQLKDLGCKWVVLGHSERRHVIGENDEFIGKKAAYALSQGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVASWDNIVIAYEPVWAIGTGKVATPQQAQEVHVAVRDWLKKNVSDEVASKTRIIYGGSVNGGNSAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1566 309 Hamap Triosephosphate isomerase [tpiA]. 58 301 IPR022896 GO:0004807|GO:0006096
Gso3g1566 309 PANTHER TRIOSEPHOSPHATE ISOMERASE 1 307 IPR000652 GO:0004807
Gso3g1566 309 ProSitePatterns Triosephosphate isomerase active site. 217 227 IPR020861 GO:0004807
Gso3g1566 309 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 59 301 IPR000652 GO:0004807
Gso3g1566 309 CDD TIM 60 300 IPR000652 GO:0004807
Gso3g1566 309 SUPERFAMILY Triosephosphate isomerase (TIM) 56 302 IPR035990 GO:0004807
Gso3g1566 309 Pfam Triosephosphate isomerase 61 301 IPR000652 GO:0004807
Gso3g1566 309 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 1 307 - -
Gso3g1566 309 Gene3D Aldolase class I 45 308 IPR013785 -
Gso3g1566 309 TIGRFAM tim: triose-phosphate isomerase 61 291 IPR000652 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1566 Gso-Chr3 41584598 41590691 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1566 K01803 - gmx:100799358 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1543 19 44357584 44361885 Gso3g1566 3 41584598 41590691 GST