Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1552 ATGTCCATTTTGGTCTCAAAAGCTACTGCGGGAATGCAAATGCAGGCTTTCCCTGTCATTCCCATTCCAACTTCCACTTCCATGCGTTCAATCTCTCACTCCTCTCCTTTCCGTCTTCATTCAGCTGCAAGCATCACCACCCTCCTCAAAGCCTGCAAGAAACGTGAACACCTCGAACAAGTGCACGCGTGCATCATCCATCGCGGCCTCGAGCAAGACCACTTCCTCGTTTTCCTCTTCATTTCCCGCGCGCACACCCTCCTCTCCACTCTCTCCTACGCCTCCTCCGTCTTCCACCGCGTTCTCGCCCCTTCCACCGTCCTCTGGAACACTCTCATCAAATCCCACTGCCAAAAGAATCTCTTTTCCCACACCCTCTCCGCCTTCGCTCGCATGAAGGCACATGGGGCACTCCCAGATAGCTTCACCTACCCTTCTGTCATTAAGGCCTGTTCCGGCACGTGCAAGGCAAGGGAGGGAAAATCGCTTCATGGCTCCGCGTTCCGGTGCGGCGTCGACCAGGATCTCTACGTGGGCACCAGTTTGATCGACATGTATGGGAAGTGCGGGGAGATTGCTGATGCTCGTAAGGTGTTTGATGGAATGTCTGACAGGAATGTGGTTTCCTGGACTGCTATGCTTGTTGGGTACGTTGCTGTTGGGGATGTTGTTCAGGCCAGGAAGCTGTTTGATGAGATGCCTCACAGAAATGTGGCTTCTTGGAACTCAATGTTGCAGGGCTTTGTGAAAATGGGGGATTTGAGCGGTGCTAGAGGCGTGTTTGACGCAATGCCTGAGAAGAATGTTGTTTCTTTCACCACCATGATTGATGGGTATGCCAAGGCTGGTGACATGGCGGCGGCGAGGTTCTTGTTTGATTGTTCTCTGGAGAAGGATGTTGTTGCTTGGTCTGCTTTGATATCAGGTTATGTCCAGAATGGGCTGCCTAATCAGGCGTTGCGAGTGTTTCTCGAGATGGAATTGATGAATGTGAAGCCTGATGAGTTTATATTGGTTAGCTTGATGTCGGCTTCCGCACAGTTGGGTCATTTAGAACTTGCTCAGTGGGTTGATTCTTATGTAAGCAAGATCTGTATTGATCTTCAGCAGGACCATGTAATTGCAGCGCTTTTGGATATGAATGCAAAGTGTGGAAACATGGAAAGGGCGTTGAAATTGTTTGATGAAAAACCTAGGCGAGATGTAGTCTTGTATTGTTCGATGATACAAGGGTTGTCAATTCATGGACGCGGTGAAGAGGCCGTGAATCTGTTTAACAGGATGCTGATGGAAGGGCTAACTCCGGATGAGGTGGCCTTCACAGTCATCCTCACAGCTTGTAGTCGTGCTGGGCTTGTTGATGAGGGACGGAACTACTTCCAGTCCATGAAGCAAAAATACTGCATTAGTCCATTGCCTGATCACTATGCATGTATGGTGGATCTTCTAAGCCGGTCAGGGCACATAAGGGATGCTTATGAACTTATAAAATTAATCCCCCGGGAGCCTCATGCTGGAGCCTGGGGTGCACTTCTTGGGGCATGTAAACTATACGGTGATTCAGAGTTGGGAGAGATTGTTGCTAATCGACTTTTTGAGCTTGAGCCTCTAAATGCAGCTAATTATGTGCTGTTGTCCGACATCTATGCAGCAGCAGAGCGATGGATAGATGTTTCCCTTGTGAGAAGTAAGATGAGGGAAAGGAGAGTGCGGAAGATACCTGGTTCCAGTAAAATTTAG 1740 0.492 MSILVSKATAGMQMQAFPVIPIPTSTSMRSISHSSPFRLHSAASITTLLKACKKREHLEQVHACIIHRGLEQDHFLVFLFISRAHTLLSTLSYASSVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVQARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPREPHAGAWGALLGACKLYGDSELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLVRSKMRERRVRKIPGSSKI* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1552 579 PANTHER OS07G0578800 PROTEIN-RELATED 43 577 IPR045215 GO:0003723|GO:0009451
Gso3g1552 579 TIGRFAM PPR: pentatricopeptide repeat domain 270 293 IPR002885 -
Gso3g1552 579 TIGRFAM PPR: pentatricopeptide repeat domain 240 270 IPR002885 -
Gso3g1552 579 TIGRFAM PPR: pentatricopeptide repeat domain 438 466 IPR002885 -
Gso3g1552 579 TIGRFAM PPR: pentatricopeptide repeat domain 208 237 IPR002885 -
Gso3g1552 579 TIGRFAM PPR: pentatricopeptide repeat domain 301 335 IPR002885 -
Gso3g1552 579 TIGRFAM PPR: pentatricopeptide repeat domain 107 140 IPR002885 -
Gso3g1552 579 TIGRFAM PPR: pentatricopeptide repeat domain 403 437 IPR002885 -
Gso3g1552 579 TIGRFAM PPR: pentatricopeptide repeat domain 180 208 IPR002885 -
Gso3g1552 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Gso3g1552 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Gso3g1552 579 Gene3D Tetratricopeptide repeat domain 369 577 IPR011990 GO:0005515
Gso3g1552 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Gso3g1552 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Gso3g1552 579 Pfam E motif 518 579 IPR046848 -
Gso3g1552 579 PANTHER OJ991214_12.4 PROTEIN 43 577 - -
Gso3g1552 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Gso3g1552 579 Pfam PPR repeat family 104 151 IPR002885 -
Gso3g1552 579 Pfam PPR repeat family 400 448 IPR002885 -
Gso3g1552 579 Pfam PPR repeat family 236 281 IPR002885 -
Gso3g1552 579 Pfam PPR repeat family 298 336 IPR002885 -
Gso3g1552 579 Pfam PPR repeat 376 399 IPR002885 -
Gso3g1552 579 Pfam PPR repeat 180 207 IPR002885 -
Gso3g1552 579 Gene3D Tetratricopeptide repeat domain 25 169 IPR011990 GO:0005515
Gso3g1552 579 Gene3D Tetratricopeptide repeat domain 170 252 IPR011990 GO:0005515
Gso3g1552 579 Gene3D Tetratricopeptide repeat domain 253 364 IPR011990 GO:0005515
Gso3g1552 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1552 Gso-Chr3 41444747 41446623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1552 89 579 Glycoside Hydrolase AT3G49170 33.929 2.42e-85 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1552 - - gmx:100795649 1144.03