Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1546 ATGCCTGCAACGCCATTCTCGTGTTCGTTCCTCACTCTTCAACCGCGCTTCAACTCCTACGTTAACCCCATCTTCCGTTCACTCACCTTCCAACTCTCTTCTTCGCCGCTCCCATTCAATGCCAACTTCTCCAGCGTCAGACTCCACTCTTCGCTCTCGCGAGCGGCGGAGACCGATTCTCCGACCGGCGGAAGGTCCGGCGCGCTAACTCCCGGTCCCGCCGTCGCCGGTGAAGTTCAAAAGATCGACGTGAATCCTCCCAAGGGGACGCGCGACTTCCCGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAGAGGTTTCGCGGTTGTATGGATTTGAAGAGGTTGATTACCCGGTGCTTGAGTCGGAGGCATTGTTCACTAGGAAAGCAGGAGAAGAAATTAAGGATCAGCTTTATTGTTTTGAAGATCGAGGCAATCGCCGTGTTGCATTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATCCAGAAAGGGAAGTCCGTGTCATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCGGTACGAGAGAATGACAAGGGGGCGTCGTCGTGAGCACTACCAATGGAACATGGATATTATTGGTGTTCCCGGGGTTATGGCTGAAGCAGAGCTTATAGCTTCTATCGTCACTTTGTTTAAGCGAATAGGAATTACAGAATCAGATGTCGGATTTAAGGTTTCCAGTCGAAAGGTTCTGCAAGAAGTATTAAATTGTTATTCAGTACCAGAAAATTTATTTGGCAAGGTCTGCGTCATTATTGATAAAATTGAGAAAATTCCAGCTGACGAGATAAAGAAAGAGTTGAAAGCTGTTGGTCTATCTCAAGAGGCTGTCCAGGAGCTATTGCAAGTCCTTTCTGTGAAGTCATTGACCGAGTTAGAAGAGAGACTTGGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGGGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATATGATCATTTGTTCTCAACTTTTGGTGCTGATGACATTTCTGCATGTGGTTTTGGATTTGGTGATGCAGTCATAGTGGAATTGCTCAAAGAGAAGGGTCTGTTACCGGAGCTTAACTTGCAAATAGATGACATTGTGTGTGCCTTGGACGAAGATCTTCAAGGATGTGCTGCTATGGTCGCTAACATTCTCAGAGAAAAAGGGCAGATTGTTGAGTTGGTTTTGGAAAGCAAACCACTTAAATGGGTTTTTAAACGTGCAGCCCGATTAAATGCTGAGCGGCTTGTGTTAGTGGGGAATTCTGAATGGCAAAGGGGTGTGGTTGGTGTCAAAATTCTCTCTACTGCTGAACAGTATGAGGTTAAACTGGATGATCTGAAGTAA 1506 0.4655 MPATPFSCSFLTLQPRFNSYVNPIFRSLTFQLSSSPLPFNANFSSVRLHSSLSRAAETDSPTGGRSGALTPGPAVAGEVQKIDVNPPKGTRDFPPEDMRLRNWLFNHFKEVSRLYGFEEVDYPVLESEALFTRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPIKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELIASIVTLFKRIGITESDVGFKVSSRKVLQEVLNCYSVPENLFGKVCVIIDKIEKIPADEIKKELKAVGLSQEAVQELLQVLSVKSLTELEERLGSSGEAVADLKQLFSLAEKIGYSKWLQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDHLFSTFGADDISACGFGFGDAVIVELLKEKGLLPELNLQIDDIVCALDEDLQGCAAMVANILREKGQIVELVLESKPLKWVFKRAARLNAERLVLVGNSEWQRGVVGVKILSTAEQYEVKLDDLK* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1546 501 CDD HisRS-like_core 97 404 IPR041715 -
Gso3g1546 501 TIGRFAM hisS: histidine--tRNA ligase 86 496 IPR015807 GO:0004821|GO:0005524|GO:0006427
Gso3g1546 501 Coils Coil 490 501 - -
Gso3g1546 501 Pfam Anticodon binding domain 420 500 IPR004154 -
Gso3g1546 501 Hamap Histidine--tRNA ligase [hisS]. 82 501 IPR015807 GO:0004821|GO:0005524|GO:0006427
Gso3g1546 501 SUPERFAMILY Class II aaRS ABD-related 416 500 - -
Gso3g1546 501 Gene3D - 409 501 IPR036621 -
Gso3g1546 501 PIRSF His-tRNA_synth 80 501 IPR004516 GO:0005737
Gso3g1546 501 PANTHER HISTIDYL-TRNA SYNTHETASE 80 501 IPR004516 GO:0005737
Gso3g1546 501 Gene3D Bira Bifunctional Protein; Domain 2 80 407 IPR045864 -
Gso3g1546 501 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 89 410 IPR006195 -
Gso3g1546 501 PANTHER HISTIDINE--TRNA LIGASE, MITOCHONDRIAL-RELATED 80 501 - -
Gso3g1546 501 MobiDBLite consensus disorder prediction 54 93 - -
Gso3g1546 501 Pfam Histidyl-tRNA synthetase 89 393 IPR041715 -
Gso3g1546 501 SUPERFAMILY Class II aaRS and biotin synthetases 86 407 IPR045864 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1546 K01892 - gmx:100793186 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1546 3 41358799 41372155 Gso3g1546 3 41358799 41372155 ECH