Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1508 ATGGCTTCTTCTCGGCTCGATTTCTTGTTCTGTAATTTGTGTGGGACAATGCTCACTGTCCCTTCCACTGAGTACGCACAATGCCCACTGTGCAAAACTCGCCGAGACATACAAGATATTTGTGATAAGGAAATAAGTTTCACAATTTCTGATGAGGATATCAGAAGAGAGCTTGGAATGGAAATAATTGAGGAACATGCGGTGATGGAATATTCTAAGGTCAGCAAGAAATGTGAAAAATGTGGCCATGGTGAAGCTACCTATTATACTAGACAGATGAGATCAGCAGATGAAGGGCAAACTACTTTCTACACATGTACCGGCTGTGGTCATCAATCTCAGGAGAATTAG 351 0.4188 MASSRLDFLFCNLCGTMLTVPSTEYAQCPLCKTRRDIQDICDKEISFTISDEDIRRELGMEIIEEHAVMEYSKVSKKCEKCGHGEATYYTRQMRSADEGQTTFYTCTGCGHQSQEN* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1508 116 Pfam Transcription factor S-II (TFIIS) 77 112 IPR001222 GO:0003676|GO:0006351|GO:0008270
Gso3g1508 116 SUPERFAMILY Zinc beta-ribbon 58 115 - -
Gso3g1508 116 PIRSF RNApol_RpoM 8 116 IPR012164 GO:0006351
Gso3g1508 116 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 5 115 - -
Gso3g1508 116 CDD Zn-ribbon_RPA12 70 116 IPR034004 GO:0006379
Gso3g1508 116 PANTHER DNA-DIRECTED RNA POLYMERASE 5 115 IPR012164 GO:0006351
Gso3g1508 116 SMART Cys4_2 76 115 IPR001222 GO:0003676|GO:0006351|GO:0008270
Gso3g1508 116 ProSiteProfiles Zinc finger TFIIS-type profile. 74 114 IPR001222 GO:0003676|GO:0006351|GO:0008270
Gso3g1508 116 Gene3D - 63 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1508 Gso-Chr3 40971317 40973234 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1508 K03000 - gmx:100527489 246.899