Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1479 ATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTCTATGTTGGACGGTTGTCTTCGAGGACTCGTTCCCGTGACCTGGAGCGTGTCTTCAGCAGATATGGAAGAGTTCGAGGCGTAGATATGAAGAATGATTTCGCCTTTGTTGAATTTAGTGATCCTCGAGATGCTGATGATGCTAGATACAACCTGGATGGTCGTGATGTTGAAGGAAGTCGTATTATTGTGGAATTTGCCAAGGGGGGTCCTCGTGGTTCCCGGGACCGGGAATATATGGGTCGGGGTCCACCTCCTGGATCTGGGCGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCCGAGATTGCAAAGCCGGGGATTGGAAGAACAAGTGTTACCGTTGTGGGGAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAGCCGATCGAGATCTCCTGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACAGAGTCGTGAGCCCTCCAAGATAAGGAAGCATAGTGCATCACCTGACCAAAGCAGCCCACGGAAGAGAGGTGACACATCTCCTGGCAATGATAGGTTGGCCACTCATCAAGATGGGTCTGACTACAGTGATGGTCCTAGAGGGAAAAGTAGAAGCCCTGCTAGCCCTGCAAGGGACCGTGATGAGGGTGGCTATGATAGCCCTAAAGCTAATGGACATAGCCGCAGCCCCAGCCGGAGCCCTAGGGATGATGACAGGAGCCCCATTGATGAAGATGATGACAACCACCGTCGCTCACAGTCACCTTGA 900 0.51 MPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGRVRGVDMKNDFAFVEFSDPRDADDARYNLDGRDVEGSRIIVEFAKGGPRGSRDREYMGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSQRGRSLSRSPVRSRSPRRGRSRDRSYSRDHSYSRSRSPVRRERSPVSEDRSQSREPSKIRKHSASPDQSSPRKRGDTSPGNDRLATHQDGSDYSDGPRGKSRSPASPARDRDEGGYDSPKANGHSRSPSRSPRDDDRSPIDEDDDNHRRSQSP* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1479 299 PANTHER SPLICING FACTOR, PUTATIVE-RELATED 7 284 - -
Gso3g1479 299 MobiDBLite consensus disorder prediction 166 215 - -
Gso3g1479 299 SMART c2hcfinal6 102 118 IPR001878 GO:0003676|GO:0008270
Gso3g1479 299 SMART c2hcfinal6 124 140 IPR001878 GO:0003676|GO:0008270
Gso3g1479 299 MobiDBLite consensus disorder prediction 273 299 - -
Gso3g1479 299 SUPERFAMILY RNA-binding domain, RBD 7 102 IPR035979 GO:0003676
Gso3g1479 299 MobiDBLite consensus disorder prediction 216 233 - -
Gso3g1479 299 ProSiteProfiles Zinc finger CCHC-type profile. 124 140 IPR001878 GO:0003676|GO:0008270
Gso3g1479 299 ProSiteProfiles Zinc finger CCHC-type profile. 102 117 IPR001878 GO:0003676|GO:0008270
Gso3g1479 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Gso3g1479 299 Pfam Zinc knuckle 102 117 IPR001878 GO:0003676|GO:0008270
Gso3g1479 299 Pfam Zinc knuckle 123 140 IPR001878 GO:0003676|GO:0008270
Gso3g1479 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Gso3g1479 299 MobiDBLite consensus disorder prediction 136 299 - -
Gso3g1479 299 MobiDBLite consensus disorder prediction 250 265 - -
Gso3g1479 299 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 284 - -
Gso3g1479 299 Gene3D - 93 121 - -
Gso3g1479 299 Gene3D - 122 168 - -
Gso3g1479 299 SUPERFAMILY Retrovirus zinc finger-like domains 93 141 IPR036875 GO:0003676|GO:0008270
Gso3g1479 299 Gene3D - 3 92 IPR012677 -
Gso3g1479 299 SMART rrm1_1 12 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1479 Gso-Chr3 40745257 40748922 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1479 K12896 - gmx:100813237 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1465 19 43521749 43525264 Gso3g1479 3 40745257 40748922 GST