Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1478 ATGCCTCGCTATGATGATAAATACGGCAATACCCGCCTCTATGTGGGGCACTTATCTTCGAGGACTCGTTCCCGGGATCTGGAGCGTGCCTTCAGCAGATATGGAAGAGTTCGGGGTGTGGATATGAAGAATGATTTCGCCTTTGTTGATTTTAGTGATCCTCGAGATGCTGATGATGCAAGATATAACTTGGATGGTCGGGATGTTGATGGAAGTCGTATTATTGTGGAATTTGCAAAAGGGGCTCCTCGTGGGTCCCGGGAATATTTGGGGCGAGGTCCTCCTCCTGGCTCTGGACGCTGCTTTAATTGTGGCCTTGATGGTCATTGGGCACGGGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACCTCGTCGTGGCAGAAGCCGTGATCGCAGTTATAGCCGTGATCGCAGCTACAGTCGATCACGATCCCCTGTCAGAAGAGAAGAAAGCCCCGTTCGTGAAGATAGGTCACAAAGCCCTCAACACAAAAATAGTCCTCAGCCCTCCAAGACAAGGAAGCATAGTCCATCACCTGACCGTAGCCCACAGAGAAGAGGTGACACATCTCCTGACAATGATAGGTTGAGCAGAAGCCCTGCAAGGGACCGCGAAGATAGGGGCTATGACAGCCCTAAAGTTAATGGTCGTAGTGGCAGCCCTAGCCGTAGCCCCAGGGATGATGACAGGAGCCCCATTGATGATGAAGACAACCACCGCCACTCACCAAGAGGCAGCGAGTCACCTTAA 864 0.5127 MPRYDDKYGNTRLYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDVDGSRIIVEFAKGAPRGSREYLGRGPPPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLSTRRGRSYSRSPVRSHSPRRGRSRDRSYSRDRSYSRSRSPVRREESPVREDRSQSPQHKNSPQPSKTRKHSPSPDRSPQRRGDTSPDNDRLSRSPARDREDRGYDSPKVNGRSGSPSRSPRDDDRSPIDDEDNHRHSPRGSESP* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1478 287 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Gso3g1478 287 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Gso3g1478 287 MobiDBLite consensus disorder prediction 165 199 - -
Gso3g1478 287 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 6 282 - -
Gso3g1478 287 MobiDBLite consensus disorder prediction 134 287 - -
Gso3g1478 287 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
Gso3g1478 287 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 6 282 - -
Gso3g1478 287 SMART rrm1_1 12 77 IPR000504 GO:0003723
Gso3g1478 287 MobiDBLite consensus disorder prediction 260 287 - -
Gso3g1478 287 Gene3D - 3 89 IPR012677 -
Gso3g1478 287 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Gso3g1478 287 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Gso3g1478 287 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Gso3g1478 287 MobiDBLite consensus disorder prediction 141 164 - -
Gso3g1478 287 Gene3D - 120 153 - -
Gso3g1478 287 Gene3D - 91 119 - -
Gso3g1478 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Gso3g1478 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Gso3g1478 287 MobiDBLite consensus disorder prediction 212 250 - -
Gso3g1478 287 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Gso3g1478 287 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1478 Gso-Chr3 40740706 40743564 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1478 K12896 - gmx:100812698 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1464 19 43517480 43520326 Gso3g1478 3 40740706 40743564 GST