Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso3g1460 | ATGGCCATAACCGCCACCATTTCCGTTCCCTTCACATCCCCCAGTCGCCGCACTCTCGCCTCCGTCAATAGCCTCTCTCCGCGTTCTACCCGATCCACTTTGCCCACACCGCAACGCACTTTCAAATACCCTAATTCGCGCCTCGTCGTGTCTTCCATGAGCACCGAAACAGCCGTCAAAACTTCATCCGCCTCCTTCCTCAACCGCAAGGAGTCCGGCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGATTGACAATAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTGCAACTGTGTGATCGGAACTTCGGCGTTGGAGCTGACGGAGTTATCTTTGTCTTGCCTGGCATCAGTGGCACCGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAGTTTTACCATTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAATGTCAGAGTTGATATGGGGGAACCGATTCTTAAAGCCTCAGATGTGCCTACTAAATTACATGCAAATAAGGATAATGCTGTTGTTAAATCAGAACTAGTTGTAGATGGAGTTATCTGGCATGTGACCTGTGTCAGCATGGGAAATCCACACTGTGTAACTTTCAGTAGAGAAGGAAGCCAGAATTTGCTTGTTGATGAATTGAAGCTAGCAGAAATTGGCCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGAGTTTGTACAAGTGTTGTCTAATTCTCACTTGAAAATGTGTGTCTGGGAGCGGGGAGCAGGAGCAACCCTAGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCAGCAGTTCTTGAGGGTCGTGCTGGGAGGAATTGCACGGTTGATCTACCTGGAGGACCTCTTCAGATTGAATGGAGGGAGGAAGATAATCATGTTTATATGACAGGCTCAGCCGATGTAGTTTATTACGGATCTTTGCCCCTTTAA | 1080 | 0.4778 | MAITATISVPFTSPSRRTLASVNSLSPRSTRSTLPTPQRTFKYPNSRLVVSSMSTETAVKTSSASFLNRKESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPGISGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNVRVDMGEPILKASDVPTKLHANKDNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso3g1460 | 359 | Hamap | Diaminopimelate epimerase [dapF]. | 75 | 359 | IPR001653 | GO:0008837|GO:0009089 | |
| Gso3g1460 | 359 | PANTHER | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC | 35 | 358 | IPR001653 | GO:0008837|GO:0009089 | |
| Gso3g1460 | 359 | MobiDBLite | consensus disorder prediction | 19 | 38 | - | - | |
| Gso3g1460 | 359 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 49 | 208 | - | - | |
| Gso3g1460 | 359 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 209 | 343 | - | - | |
| Gso3g1460 | 359 | SUPERFAMILY | Diaminopimelate epimerase-like | 75 | 204 | - | - | |
| Gso3g1460 | 359 | Pfam | Diaminopimelate epimerase | 77 | 197 | IPR001653 | GO:0008837|GO:0009089 | |
| Gso3g1460 | 359 | Pfam | Diaminopimelate epimerase | 231 | 351 | IPR001653 | GO:0008837|GO:0009089 | |
| Gso3g1460 | 359 | ProSitePatterns | Diaminopimelate epimerase signature. | 138 | 152 | IPR018510 | GO:0005737|GO:0008837|GO:0009089 | |
| Gso3g1460 | 359 | PANTHER | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC | 35 | 358 | - | - | |
| Gso3g1460 | 359 | SUPERFAMILY | Diaminopimelate epimerase-like | 218 | 357 | - | - | |
| Gso3g1460 | 359 | TIGRFAM | DapF: diaminopimelate epimerase | 76 | 357 | IPR001653 | GO:0008837|GO:0009089 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso3g1460 | Gso-Chr3 | 40595360 | 40599380 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso3g1460 | K01778 | - | gmx:100807528 | 708.368 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso19g1449 | 19 | 43371603 | 43375803 | Gso3g1460 | 3 | 40595360 | 40599380 | GST |