Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1446 ATGGTGGGTGTTATTTCGTTGGTAACAGGAATGGCTGGTCCAAGTGGGTTTGGATCAGCTTCAACTGCAGAACAGGTTACTGAAGGAGTTGATGCCAGCAACCTCACTGCAATTATCACAGGAGGAGCAAGTGGTATAGGATTGGAGACAGCACGAGTGTTGGCTCTTCGAAAGGTCCATGTCATCATTGCAGTACGAAACATGGTGTCTGCAAAAGAGGCTAAACAACAAATACTAGAGGAGAATGAGTCTGCACGAGTGGACATAATGAAGCTCGACCTTTGCTCAGTGAATTCTATTAGATCATTTGTGGACAACTTCATAGCTCTTGATCTTCCTCTCAACATTTTAATAAACAATGCTGGAGTGATGTTCTGCCCATTCAAGCTCTCAGAGGATGGCATTGAGATGCAATTTGCAACAAACCATATTGGTCATTTCCACTTATCAAACCTACTTCTTGACAAAATGAAACAAACTGCAAAAGCCACTGGAATAGAGGGCAGGATCATAAATCTGTCATCAATTGCCCATAACTACACTTACAGAAAGGGGATTAGATTTAATAAGATCAATGAACGGAAAGGTTACGGTAACAAGAAGGCGTATGGACAGTCCAAGTTAGCAAACATATTACATACAAATGAGCTTTCTCGTCGCCTGCAGGAAGAGGGTGTGAACATTACAGCAAACTCAGTCCACCCAGGAGTGATAATGACTCCTCTTATGAGACACTCTTCTTACCTTATGCACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAGGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCAATGCAAACCAAGTTCACATGCCAAAAACAAACAGCTTGCAAAGAAACTCTGGGATTTCAGTAACGATTTGATCAAATCAATCTCAAAAGCTTGA 972 0.4239 MVGVISLVTGMAGPSGFGSASTAEQVTEGVDASNLTAIITGGASGIGLETARVLALRKVHVIIAVRNMVSAKEAKQQILEENESARVDIMKLDLCSVNSIRSFVDNFIALDLPLNILINNAGVMFCPFKLSEDGIEMQFATNHIGHFHLSNLLLDKMKQTAKATGIEGRIINLSSIAHNYTYRKGIRFNKINERKGYGNKKAYGQSKLANILHTNELSRRLQEEGVNITANSVHPGVIMTPLMRHSSYLMHFLKVFTFYIWKNVPQGAATTCYVALHPSVKGVTGKYFVDCNQCKPSSHAKNKQLAKKLWDFSNDLIKSISKA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1446 323 Pfam short chain dehydrogenase 36 245 IPR002347 -
Gso3g1446 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
Gso3g1446 323 Gene3D - 23 320 - -
Gso3g1446 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Gso3g1446 323 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 320 - -
Gso3g1446 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Gso3g1446 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Gso3g1446 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Gso3g1446 323 PANTHER RETINOL DEHYDROGENASE 5 320 - -
Gso3g1446 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Gso3g1446 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Gso3g1446 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Gso3g1446 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Gso3g1446 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1446 Gso-Chr3 40485174 40489857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1446 35 242 Miscellaneous Gene Families AT2G29340 30.455 9.81e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1446 K11153 - gmx:100801849 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1446 3 40485174 40489857 Gso3g1446 3 40485174 40489857 ECH
Gso19g1436 19 43261993 43265863 Gso3g1446 3 40485174 40489857 GST
Gso3g1446 3 40485174 40489857 Gso10g0381 10 4048756 4054160 PCT
Gso10g0381 10 4048756 4054160 Gso3g1446 3 40485174 40489857 PCT