Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1422 ATGACAGGGTTTCCTCAACCTCGCCGCGATCACGCTTCTTCTTCCTCCTCCTCCTCCTCGCACAATTCCAACAGCAGTGGTAGCAATGTATTTAATTTGCTTGCAAGGAGGGAGATCTCGCCCCGATCAAGATATGTGGCAAAAAGGCATTGGGGAGAACCCGGAGAAGCTTCAAAATCAAAGTCTAGTCCTTATTCTCATCCTAAAAATGAAGTTGTGAGAGATGCAAGACGTGGTCTCCTCTCATGGGTTGAGGCTGAGTCATTGCGGCATTTGTCTGCTAAGTATTGTCCTTTGTTGCCTCCTCCAAGGTCTACTATTGCAGCAGCATTTAGCCCAGATGGGAAAGTTCTTGCCTCCACACACGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTATTAGTTGGTCATAGGAGAACACCTTGGGTGGTTAGATTCCATCCATTGCATCCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTACCGTCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCTGTTGCATCTGGCCACAAGTTGTACATATGGTTCCACAACAAGAAAGGTGAAGCATCCTCACCAATATTTGTGTTGAAGACAAAGCGCTCCCTTCGTGCTGTGCATTTTCACCCTCACGCTGCACCATATCTTTTAACTGCAGAGGTCAATGATCTTGAGTCTTCAGATTCCTCAATGACGGAGGCGACATCTCTTGGTTATTTACAATATCCTCCGCCTGCTGTTTTTGTCACAAATATTCATCCTACAGAACATATTAGTTTGTCCAGCGAACTACCTTATGTGTCATTACCTTTCTATGTTATGCCGGCATATACTGTTGATGAGTCAAGAGCAGAACTACAGCATGCTAGTCATGATGTTGGCTCAGGTAGCATGGAAATTGAGTCTGCTGCCATGGTACAGTTACATGCAGACCCAAGTGCAGCAGAGCATTATGAGACTACCGTGTCTCCCATGGATACATTCTCTGAGATGCCCTCTAGCTCTCAAACTGGTGCAGAATATCCTGCTCATACTGCTTTCTCTAATGGAATGGGAATTGGCCTCAGTAATCTCACAATGGATGGTATGGAGACTGATGAAACCAGACCTGCTGAAGGAAGCCAACATGGGAACTTGACTAATACCTATTCTCTTAATGGCATGCTACACGGACTGTCGAGGCAAACTGCAAACCGTGGGGTTCTCTCGGAGTTTGGTCAATTTCATCAGTTTTTTCCTTCAAGAGACCCAAGTGGATGGGAGATTCCTTTTCTCCATGGATGGATAATGGGTCAAAGCCAAGTTGGTGTTCCTTCAATGCTTCCTCACATGGGTGCTAGTCGTGATAATCTATCCCAACACATTGGTTCTTCTTCCATAAAGGCATCTAATCCTTCCACTTCTAATGTTGATGCAGCGATGCCATCTTCAGCAATACCTGGCAGCATCAGCATACCGGGTTCTTCAATGAGATCAGGTTTACGGAATCATTTTTCACAGTCCCGTGTACCTGTATCTGAATCTGGCAATCTTGCTGCTTCTATTAATGCCCCACATGATGGATTCGATATCCAAACCATCGTAAGTCGAATTCAGTCAGAACTTGCCACATCAGTGGCTGCAACAGCTGCAGAGTTGCCTTGTACTGTGAAGTTAAGAGTATGGTCACATGACATAAAAAATCCCTGTGCTCCACTTAATGCTGATAGATGTCGTCTAACCATACCACATGCTGTCCTCTGCAGTGAAATGGGTGCTCATTTTTCACCATGTGGTAGATTTTTAGCTGCCTGTGTTGCATGTGTGCTTCCTCATATAGAAGCAGATCCAGGATTACAAACTCCAGTACACCAAGATCCTGGTGTTGCAACATCACCAACCCGGCATCCAATTTCAGCACACCAAGTTATGTATGAGCTGCGGATATATTCTCTCGAGGAGGCAACATTTGGTTCGGTGCTTGCTTCACGAGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGTTCTCGCCTACATCTGAGCACATACTACTTGCGTATGGTCGGCGCCATGGTTCTCTTCTTAAAAGTATTGTTATCGATGGAGAAACAACATTGCCTATATATACAGTGTTAGAGGTATACAAAGTGTCAGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGACGAGGTCAATGTGGCATGCTTTCATCCTTTTGCTGGGGGAGGACTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGGTCCTCCAGTATGACGGTGCTCATGCAGTGAATGGCACTGGACCAAGTTACTTTCCTGAGGAGACCATCGTTGGTGTCAGTCAGTGA 2430 0.4481 MTGFPQPRRDHASSSSSSSSHNSNSSGSNVFNLLARREISPRSRYVAKRHWGEPGEASKSKSSPYSHPKNEVVRDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWFHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLESSDSSMTEATSLGYLQYPPPAVFVTNIHPTEHISLSSELPYVSLPFYVMPAYTVDESRAELQHASHDVGSGSMEIESAAMVQLHADPSAAEHYETTVSPMDTFSEMPSSSQTGAEYPAHTAFSNGMGIGLSNLTMDGMETDETRPAEGSQHGNLTNTYSLNGMLHGLSRQTANRGVLSEFGQFHQFFPSRDPSGWEIPFLHGWIMGQSQVGVPSMLPHMGASRDNLSQHIGSSSIKASNPSTSNVDAAMPSSAIPGSISIPGSSMRSGLRNHFSQSRVPVSESGNLAASINAPHDGFDIQTIVSRIQSELATSVAATAAELPCTVKLRVWSHDIKNPCAPLNADRCRLTIPHAVLCSEMGAHFSPCGRFLAACVACVLPHIEADPGLQTPVHQDPGVATSPTRHPISAHQVMYELRIYSLEEATFGSVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYKVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGTGPSYFPEETIVGVSQ* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1422 809 SUPERFAMILY WD40 repeat-like 108 249 IPR036322 GO:0005515
Gso3g1422 809 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 808 - -
Gso3g1422 809 MobiDBLite consensus disorder prediction 7 33 - -
Gso3g1422 809 SUPERFAMILY WD40 repeat-like 618 785 IPR036322 GO:0005515
Gso3g1422 809 SMART WD40_4 177 214 IPR001680 GO:0005515
Gso3g1422 809 SMART WD40_4 744 784 IPR001680 GO:0005515
Gso3g1422 809 SMART WD40_4 93 131 IPR001680 GO:0005515
Gso3g1422 809 SMART WD40_4 134 174 IPR001680 GO:0005515
Gso3g1422 809 MobiDBLite consensus disorder prediction 1 33 - -
Gso3g1422 809 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 179 - -
Gso3g1422 809 Gene3D - 90 263 IPR015943 GO:0005515
Gso3g1422 809 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 183 IPR001680 GO:0005515
Gso3g1422 809 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 1 808 - -
Gso3g1422 809 Pfam WD domain, G-beta repeat 108 131 IPR001680 GO:0005515
Gso3g1422 809 Pfam WD domain, G-beta repeat 135 174 IPR001680 GO:0005515
Gso3g1422 809 MobiDBLite consensus disorder prediction 45 71 - -
Gso3g1422 809 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1422 Gso-Chr3 40175876 40183709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1422 111 213 Miscellaneous Gene Families AT5G08390 30.189 2.31e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1422 - - gmx:100794246 1589.7