Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1413 ATGGAAGAAGAAAGTGCGTTGAGGCCGATGGACGCTGAGCAACTGAGAGAGCAGGCTCATAAGATGGTCGACTTCATTGCCGATTACTACAAAACCATCGAAGACTTCCCCGTTCTAAGCCAAGTCCAGCCAGGTTATCTTGGGAAGCTTTTACCAGATTCTGCACCTGATTCTCCTGAGTCATTGCAAAATGTTTTGGATGATGTGCAGGAAAAAATACTGCCAGGGGTGACGCACTGGCAAAGCCCAAATTATTTTGCGTATTTTCCTTCCAACAGTAGCATTGCTGGGTTTCTAGGAGAGATGCTCAGTGCGGGTCTTAACATCGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACTGAACTTGAGACGATTGTTCTGGATTGGCTTGCAAAGGCTTTCCAGCTGCCTGATTATTTCTATTCTAGTGGGAAAGGTGGTGGAGTTATACAGGGAACTGCAAGTGAAGCTGTACTAGTTGTCTTATTAGCTGCCCGTGACAAGATCTTAAGGAGGGTTGGAAGGAATGCCCTTCCTAAGCTTGTGATGTATGCATCTGATCAAACACACTCTGCTTTACTAAAAGCTTGCCAGATAGCAGGAATTAATCCAGAGCTATGCAGGTTGCTTAAAACTGATTCTTCCACAAATTATGCACTTTCTCCTGATGTACTTTCTGAAGCAATTTCAAATGACATTGCTGGCGGTCTTGTACCCTTTTTCTTATGTGCTACTGTTGGTACCACTTCATCAACAGCTGTTGATCCTCTGCCTGCATTGGGAAAAATTGCCAAGACCAACAAACTTTGGTTTCATGTGGATGCTGCTTATGCTGGAAGTGCTTGTGTATGTCCAGAGTACCGCCACTGCATTGATGGTGTTGAAGAAGCCGACTCATTTAACATGAATGCACATAAATGGTTCCTGACTAACTTTGACTGTTCATTACTTTGGGTTAAGGACAGAAGTTCTCTGATTCAATCATTGTCTACAAATCCTGAATTTCTGAAAAACAAGGCCTCTCAAGGAAACATGGTCATAGATTACAAAGATTGGCAAATTCCTCTTGGACGTCGCTTTAGATCATTAAAACTGTGGATGGTGTTGCGACTCTATGGATTGGATGGTCTGCGAAGTCACATAAGAAACCACATTGAGTTGGCTGCTAACTTTGAGGAGCTTGTACGTCAGGACACAAGATTCAAGGTTGTTGCACCTCGCACGTTCTCTTTAGTTTGTTTTCGGCTGCTGCCCCATCCCAATTCTGCAGATCATGGGAATAAGCTAAATAGTGATCTACTCGACTCAGTAAATTCAACTGGAAATGCTTTCATAACACACACGGTTCTATCAGGGGAGTACATTCTACGTTTTGCAGTAGGAGCACCATTGACAGAAAGGAGGCATGTCAATATGGCATGGCAAATTTTGCAAGATAAAGCCACTGCTCTACTTGAGAGTTTATAG 1470 0.4347 MEEESALRPMDAEQLREQAHKMVDFIADYYKTIEDFPVLSQVQPGYLGKLLPDSAPDSPESLQNVLDDVQEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLNIVGFSWITSPAATELETIVLDWLAKAFQLPDYFYSSGKGGGVIQGTASEAVLVVLLAARDKILRRVGRNALPKLVMYASDQTHSALLKACQIAGINPELCRLLKTDSSTNYALSPDVLSEAISNDIAGGLVPFFLCATVGTTSSTAVDPLPALGKIAKTNKLWFHVDAAYAGSACVCPEYRHCIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRSSLIQSLSTNPEFLKNKASQGNMVIDYKDWQIPLGRRFRSLKLWMVLRLYGLDGLRSHIRNHIELAANFEELVRQDTRFKVVAPRTFSLVCFRLLPHPNSADHGNKLNSDLLDSVNSTGNAFITHTVLSGEYILRFAVGAPLTERRHVNMAWQILQDKATALLESL* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1413 489 Pfam Pyridoxal-dependent decarboxylase conserved domain 44 417 IPR002129 GO:0016830|GO:0019752|GO:0030170
Gso3g1413 489 SUPERFAMILY PLP-dependent transferases 10 482 IPR015424 -
Gso3g1413 489 PANTHER BNAA07G00240D PROTEIN 10 488 - -
Gso3g1413 489 Gene3D - 91 383 IPR015421 GO:0003824
Gso3g1413 489 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 300 321 IPR021115 GO:0016831
Gso3g1413 489 Gene3D - 5 90 - -
Gso3g1413 489 CDD DOPA_deC_like 85 480 - -
Gso3g1413 489 PRINTS Aromatic-L-amino-acid decarboxylase signature 15 34 IPR010977 GO:0006520|GO:0016831
Gso3g1413 489 PRINTS Aromatic-L-amino-acid decarboxylase signature 38 55 IPR010977 GO:0006520|GO:0016831
Gso3g1413 489 PRINTS Aromatic-L-amino-acid decarboxylase signature 56 75 IPR010977 GO:0006520|GO:0016831
Gso3g1413 489 PRINTS Aromatic-L-amino-acid decarboxylase signature 82 101 IPR010977 GO:0006520|GO:0016831
Gso3g1413 489 PRINTS Aromatic-L-amino-acid decarboxylase signature 103 121 IPR010977 GO:0006520|GO:0016831
Gso3g1413 489 PRINTS Aromatic-L-amino-acid decarboxylase signature 122 141 IPR010977 GO:0006520|GO:0016831
Gso3g1413 489 PRINTS Aromatic-L-amino-acid decarboxylase signature 147 167 IPR010977 GO:0006520|GO:0016831
Gso3g1413 489 PRINTS Aromatic-L-amino-acid decarboxylase signature 356 371 IPR010977 GO:0006520|GO:0016831
Gso3g1413 489 PRINTS Aromatic-L-amino-acid decarboxylase signature 399 418 IPR010977 GO:0006520|GO:0016831
Gso3g1413 489 Gene3D Aspartate Aminotransferase, domain 1 384 489 IPR015422 GO:0003824
Gso3g1413 489 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 10 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1413 Gso-Chr3 40076138 40082926 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1413 K01593 - gmx:100791074 976.852