Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1333 ATGGCTCTTGCCCTGAAGTCAAGTTGCTTCTTGCAATTGAAGAAACCTGAGGCTGGTTTCAATGTTTGTTTTTCATCTAAGAAAGCTATAATCTCCGTGAAACGACACACTCCCGTGGCTGCTATCAGGACCATGGAAGCAGTGGGACTCTCTGCAACATTCACCAGGTTGAAAAAAGAAGGAAAAGTAGCTTTCATCCCGTATGTCACTGCTGGTGATCCTGACCTTTCAACCACAGCAGAAGCACTGAAAGTGCTTGATTCATGTGGGTCTGACATAATTGAGCTAGGTGTTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTGAATGCGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGATAAATTTATGTCCACTATAAGAGACAGTGGTGTACATGGGCTTGTAGTCCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACAACTCCAACAAACCGAATGAGAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGAGCATCAGTTAGTGGTTCTGTTCAGTCTCTTTTGAAGGAAATTAAAGAGGCAACTACTAAACCTGTGGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGTGGTATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGATTGAAAGAACTTGAAGTTTTCACCCGCTCCTTAAAAGCGGCACTTCCTTAA 936 0.4466 MALALKSSCFLQLKKPEAGFNVCFSSKKAIISVKRHTPVAAIRTMEAVGLSATFTRLKKEGKVAFIPYVTAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNLNAIIDMLKEVVPQLSCPIALFTYYNPILKRGTDKFMSTIRDSGVHGLVVPDVPLEETETLRTEAKKHGIELVLLTTPTTPTNRMRAIVDVAEGFVYLVSSVGVTGARASVSGSVQSLLKEIKEATTKPVAVGFGISKPEHVKQVVVWGADGVIVGSAIVKVLGEAKSPQEGLKELEVFTRSLKAALP* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1333 311 Hamap Tryptophan synthase alpha chain [trpA]. 60 309 IPR002028 GO:0004834|GO:0006568
Gso3g1333 311 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 46 310 IPR002028 GO:0004834|GO:0006568
Gso3g1333 311 Gene3D Aldolase class I 49 311 IPR013785 -
Gso3g1333 311 PANTHER TRYPTOPHAN SYNTHASE ALPHA CHAIN 46 310 - -
Gso3g1333 311 CDD Tryptophan_synthase_alpha 64 307 IPR002028 GO:0004834|GO:0006568
Gso3g1333 311 TIGRFAM trpA: tryptophan synthase, alpha subunit 54 307 IPR002028 GO:0004834|GO:0006568
Gso3g1333 311 ProSitePatterns Tryptophan synthase alpha chain signature. 94 107 IPR018204 GO:0004834
Gso3g1333 311 SUPERFAMILY Ribulose-phoshate binding barrel 50 290 IPR011060 -
Gso3g1333 311 Pfam Tryptophan synthase alpha chain 54 309 IPR002028 GO:0004834|GO:0006568
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1333 Gso-Chr3 39227674 39232530 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1333 K01695 - gmx:100808400 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1336 19 42063810 42069101 Gso3g1333 3 39227674 39232530 GST