Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1277 ATGACAAGTCTCGCGCCACGCTTCTCATTCTCAGTGATTCCTGGGAGTCACCACAGCAAACCCAAATTCTCTTGTTTTCACGAACCCTTTATCCAAAGGAAGCACCTTTGGCCCAAACTTGGATTGCAAAACCCCATTTCCCCCTTTTCTCGGAACCCCACTTCTTCAAAATTGTGTGCCACGTCACGCTTGTCCATTGAGGAAACGGAGCAGCAACTTGGAACCTTGAGCCGACCCGAATACCTAAAAGGTTCATCGGCGTATTTGTTTAGGACTGAAACTGGTGGCGGGTTGGTGAAAGTTTATGTCACAAAGAGAAAAGATAGGTATTTTGTTTACACTGAGATTTCATCGTTGGATATAAGTGGTAGTGTTGGTGAAACGCTTTTGTTGTGTTGGGGTGTGTATAGAAGTGATTCATCGTGTTTTGTGGATCTGGATACGATAGGTTTGAGAGAAAATGCGGCGACGGGGATGAATGTTAGTCCCTTGGTGCAAAATTCTGATGGAAACTTTGCAGTTGAATTGGAATTTGATGCAAAGCATGTTCCTTTGTACTTGTCGTTTTTCTTGATGTCGTCTTTGGATGCAGGGATGGAGATTAGAAGCCATAGGGGAACGAATTTTTGCGTGCCGGTTGGGTTGCTTCCGGGGTACCCGGGTCCTTTGGGGCTCTTTTGTTCTCCTGATGGGTCTGTGAATTTTGCTATTTTCTCGAGACGTGCTGAGAGTGTGGTTTTATGCTTGTATGATGAGAATGACATGGAGAAGCCTGCTTTGGAGCTTGATTTGGATCCTTATGTGAATAGGACAGGTGATATCTGGCATGTCTCGTTTGAGAGTGCCAAGGGTTTCATGAGCTATGGTTATAGCTGCAGAGGGGGTGTTCTTAAGAGGAACAAGGATGATGGTTTTGCTGAGCACGTTGTTTTGGATCCGTATGCTAAGATTGTTGGGAATTCTTATCCTGATGGTGTTGGATTTGTGAAGAATCTTGGATGGTTGGGGAAGGAACCTGATTTTGATTGGGGTGGTGATTGTCATCTGGATTTGTCCATGGAGAAACTGGTGGTTTATAGGTTGAATGTGAAGCGCTTTACGCAGCACGAGTCCAGCCAACTTCCGAGTGGTTTAGCTGGGACCTTTACTGGTTTGGCTAAGAAGGTTCAGCATTTTAAAGATCTAGGAGTGAATGCCATTCTTCTGGAGCCGGTTTTCACATTTGACGAGAAAAAGGGACCATATTTTCCTAGCCACTTTTTTTCTCTGATGCACATTTATGGGCCATCTGGTGGTCCTGTATCTGCTATTGCCTCTATGAAAGAGATGGTTAAAACTATGCATGCCAATGGGATAGAAGTTCTTGTGGAAGTTGTTTTCTCCAATACCGCTGAGATTGGTGCTCTACAGGGAATTGACGACTCAACCTACTATTATGCAAATGGAGTTGGTGGTTTGAAGGGGCAGAGTGCTCTGAACTGTAACTATCCTATAGTGCAAAGTTTGATTCTGGATAGTCTTCGGCATTGGGTGACTGAGTTTCACATTGATGGCTTCTCTTTCTTAAATGCTTCACACCTTCTGAGAGGATTTCATGGGGAGTACTTGACTAGACCTCCATTAGTTGAAGCTATAGCTTTTGACCCAGTACTCTCCAAGACTAAAATCATTGCAGATTGTTGGGATCCCCATGGCATGGTAGCAAAGGAAATTCGCTTTCCTCATTGGATGAGATGGGCTGAAATAAATACAAATTTTTGTAACGATGTGAGGAACTTTTTAAGGGGTGAAAATCTTCTTAGCAACCTTGCAACAAGACTTTGCGGGAGTGGGGACATATTTTCTGGTGGAAGAGGTCCCGCATTCTCTTTTAATTACATTGCCAGAAATTTTGGAGTTTCTCTTGTGGACTTGGTTAGCTTCAGCAGTACAGATGAATTAAGTTGGAATTGTGGAGAAGAAGGACCTACAAACAACACTGCTATTCTTGAAAGACGACTCAAGCAAATCCGTAATTTCCTCTTCATCTTGTTTGTGTCATTAGGAGTACCTGTTCTGAACATGGGAGATGAATGTGGCCAGTCTTCTGGTGGTTTTACTGCATATGATGGTATAAAGCCTTTCAGTTGGAGTTCTTTGAAAACAGGCTTCGGTAAACAAACCTCACAATTCATTTTCTTTTTAAGTTCATTTAGAAGGAGGAGAAGTGATCTTCTTCAGAGGATGAGCTTCTTAAAAGAAGAAAACATTGAATGGTATGGAAGTGATGGGGCCCCACCAAGATGGGAAGACCTATCCTGCAAGTTCCTAGCCATGGCTTTGAAGGCCGAAGAAAAGGAGTTTCTAGAGAGCTCTGTATCTTCTGATATATCCGGCGATCTATTTATTGCTTTCAATGCAGCTGGTCATCCAGAAACTGCAGTTTTACCCTTGCCTCCAGAAGGAATGTTATGGTACCGTTTAGTTGACACGGCTCTTCCATTTCCTGGCTTTTTCTCGGCCAGTGGTGAAGTTGTTCCTGAGCAGACAGCAGGTTTATTTACTTATCGAATGAAGTCTTACAGCTGCACTTTGTTTGAGGCAAATAATAGTACCATTTAA 2601 0.4321 MTSLAPRFSFSVIPGSHHSKPKFSCFHEPFIQRKHLWPKLGLQNPISPFSRNPTSSKLCATSRLSIEETEQQLGTLSRPEYLKGSSAYLFRTETGGGLVKVYVTKRKDRYFVYTEISSLDISGSVGETLLLCWGVYRSDSSCFVDLDTIGLRENAATGMNVSPLVQNSDGNFAVELEFDAKHVPLYLSFFLMSSLDAGMEIRSHRGTNFCVPVGLLPGYPGPLGLFCSPDGSVNFAIFSRRAESVVLCLYDENDMEKPALELDLDPYVNRTGDIWHVSFESAKGFMSYGYSCRGGVLKRNKDDGFAEHVVLDPYAKIVGNSYPDGVGFVKNLGWLGKEPDFDWGGDCHLDLSMEKLVVYRLNVKRFTQHESSQLPSGLAGTFTGLAKKVQHFKDLGVNAILLEPVFTFDEKKGPYFPSHFFSLMHIYGPSGGPVSAIASMKEMVKTMHANGIEVLVEVVFSNTAEIGALQGIDDSTYYYANGVGGLKGQSALNCNYPIVQSLILDSLRHWVTEFHIDGFSFLNASHLLRGFHGEYLTRPPLVEAIAFDPVLSKTKIIADCWDPHGMVAKEIRFPHWMRWAEINTNFCNDVRNFLRGENLLSNLATRLCGSGDIFSGGRGPAFSFNYIARNFGVSLVDLVSFSSTDELSWNCGEEGPTNNTAILERRLKQIRNFLFILFVSLGVPVLNMGDECGQSSGGFTAYDGIKPFSWSSLKTGFGKQTSQFIFFLSSFRRRRSDLLQRMSFLKEENIEWYGSDGAPPRWEDLSCKFLAMALKAEEKEFLESSVSSDISGDLFIAFNAAGHPETAVLPLPPEGMLWYRLVDTALPFPGFFSASGEVVPEQTAGLFTYRMKSYSCTLFEANNSTI* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1277 866 PANTHER GLYCOGEN DEBRANCHING ENZYME 64 864 - -
Gso3g1277 866 CDD AmyAc_plant_IsoA 352 740 IPR044096 GO:0019156|GO:0019252
Gso3g1277 866 Gene3D Immunoglobulins 210 326 IPR013783 -
Gso3g1277 866 Gene3D Glycosidases 337 747 - -
Gso3g1277 866 Coils Coil 728 748 - -
Gso3g1277 866 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 222 315 IPR004193 GO:0004553|GO:0005975
Gso3g1277 866 CDD E_set_GDE_Isoamylase_N 222 360 IPR044505 -
Gso3g1277 866 SUPERFAMILY Glycosyl hydrolase domain 747 861 - -
Gso3g1277 866 SMART aamy 360 732 IPR006047 GO:0005975
Gso3g1277 866 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 64 864 - -
Gso3g1277 866 Pfam Alpha amylase, catalytic domain 380 464 IPR006047 GO:0005975
Gso3g1277 866 Gene3D - 748 866 IPR013780 -
Gso3g1277 866 SUPERFAMILY (Trans)glycosidases 339 738 IPR017853 -
Gso3g1277 866 SUPERFAMILY E set domains 217 347 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1277 Gso-Chr3 38476776 38479792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1277 56 865 Glycoside Hydrolase AT1G03310 56.934 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1277 K01214 - gmx:100797949 1749.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1277 19 41309651 41312646 Gso3g1277 3 38476776 38479792 GST