Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1255 ATGAAAAAATCGTTTCTCGTTCCCCATTCTCTACTTTCTACCCCAAAACCCCAACCGCGGCATCATCTTCGACACCATAAACCACCATCCTCTGCGTCGGTTTCCACAAACCAAACCAAATGGAACTCCAAAACCAACGTGATAATCACACACCCAACCCTTGTGGTAATGGAATCATGTTCCTCCATGCACCAACTGCGTCAGATTCAAGCACGCATGACTCTCACCGGCCTCATCAACGACACCTTCCCCCTCAGCAGAGTCCTCGCTTTCTGCGCCCTCGCCGACGCCGGCGACATCCGCTACGCCCATCGTCTCTTCCGCCGTATACCCGAACCCAACACCTTCATGTGGTACACCATGATCCGAGGCTACAACAAAGCGCGAATTCCCTCCACGGCATTCTCCTTCTTTCTCCACATGCTTCGAGGACGCGTTCCCTTGGACGCAAGAACCTTCGTTTTCGCGCTCAAGGCCTGCGAGCTCTTCTCGGAGCCCTCCCAGGGGGAATCCGTGCATTCCGTTGCTCGGAAAACGGGGTTTGATTCTGAGTTGCTTGTGCGAAATGGGTTGGTGAACTTTTATGCTGATCGTGGTTGGTTGAAGCACGCGCGCTGGGTGTTTGATGAAATGTCTGCTATGGATGTTGTTACTTGGACCACGATGATTGATGGGTATGCGGCGTCTAACTGTTCAGATGCGGCTATGGAGATGTTTAATTTGATGTTGGACGGTGATGTTGAGCCCAATGAGGTCACGTTGATTGCGGTGCTTTCGGCTTGCTCTCAGAAGGGTGACCTTGGTATGGGGAAATACATTCATGAGATTATGGAGAAGAAGAATATGAGGTGGGGTTTGAGTTTACACAATGCCTTGTTGGATATGTATGTGAAATGTGGTAGTTTGATTGCTGCTAGGGAGCTTTTTGACAGAATGGAAACTAGGGATGTAATTTCGTGGACTAGCATGGTTAATGGGTATGCTAAAAGCGGTTACTTGGAGTCTGCAAGGAGGTTTTTCGATCAAACTCCTCGGAAAAATGTGGTCTGCTGGAGTGCGATGATTGCGGGGTATTCTCAGAATGACAAACCTGAGGAATCATTAAAATTGTTTCACGAAATGCTTGGGGCAGGTTTTGTTCCGGTTGAGCACACCTTAGTGAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAGTTTGGGTTGCTGGATTCATCAATATTTTGTTGATGGAAAAATAATGCCACTTAGTGCTACTTTGGCAAATGCCATTATAGATATGTATGCCAAATGTGGAAACATAGATAAAGCTGCAGAAGTCTTCAGTACAATGTCGGAGAGAAACTTGGTTTCTTGGAATTCTATGATTGCAGGGTATGCTGCCAATGGTCAAGCAAAGCAAGCTGTTGAAGTTTTTGATCAGATGAGGTGTATGGAATTCAACCCGGATGATATTACGTTTGTTAGTTTGTTGACAGCTTGCAGTCATGGTGGTTTGGTTTCAGAAGGTCAAGAATACTTTGATGCCATGGAAAGAAACTATGGAATAAAACCCAAAAAGGAACATTATGCTTGCATGATTGATCTACTAGGTAGAACTGGGCTCCTGGAAGAAGCTTACAAGTTGATAACAAACATGCCAATGCAACCTTGTGAGGCAGCTTGGGGTGCCCTTCTAAGTGCTTGTAGAATGCACGGTAATGTTGAGCTGGCCAGATTGTCTGCTCTTAATCTTCTAAGCTTGGATCCAGAAGACAGTGGCATTTATGTGCAGCTGGCAAATATTTGTGCTAATGAGAGAAAATGGGGTGATGTAAGGAGGGTGCGGAGTTTGATGAGAGACAAGGGTGTGAAGAAGACTCCTGGTCATAGCTTAATAGAGATAGATGGTGAATTTAAAGAGTTTTTGGTGGCAGATGAATCACACACCCAATCTGAGGAGATCTATAAAGTACTGGATGCAATATTTTTGTTGTCAAAATTGGAAGACTGTGACTGTGAGTTGTAG 2010 0.4587 MKKSFLVPHSLLSTPKPQPRHHLRHHKPPSSASVSTNQTKWNSKTNVIITHPTLVVMESCSSMHQLRQIQARMTLTGLINDTFPLSRVLAFCALADAGDIRYAHRLFRRIPEPNTFMWYTMIRGYNKARIPSTAFSFFLHMLRGRVPLDARTFVFALKACELFSEPSQGESVHSVARKTGFDSELLVRNGLVNFYADRGWLKHARWVFDEMSAMDVVTWTTMIDGYAASNCSDAAMEMFNLMLDGDVEPNEVTLIAVLSACSQKGDLGMGKYIHEIMEKKNMRWGLSLHNALLDMYVKCGSLIAARELFDRMETRDVISWTSMVNGYAKSGYLESARRFFDQTPRKNVVCWSAMIAGYSQNDKPEESLKLFHEMLGAGFVPVEHTLVSVLSACGQLSCLSLGCWIHQYFVDGKIMPLSATLANAIIDMYAKCGNIDKAAEVFSTMSERNLVSWNSMIAGYAANGQAKQAVEVFDQMRCMEFNPDDITFVSLLTACSHGGLVSEGQEYFDAMERNYGIKPKKEHYACMIDLLGRTGLLEEAYKLITNMPMQPCEAAWGALLSACRMHGNVELARLSALNLLSLDPEDSGIYVQLANICANERKWGDVRRVRSLMRDKGVKKTPGHSLIEIDGEFKEFLVADESHTQSEEIYKVLDAIFLLSKLEDCDCEL* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1255 669 TIGRFAM PPR: pentatricopeptide repeat domain 289 317 IPR002885 -
Gso3g1255 669 TIGRFAM PPR: pentatricopeptide repeat domain 318 347 IPR002885 -
Gso3g1255 669 TIGRFAM PPR: pentatricopeptide repeat domain 423 450 IPR002885 -
Gso3g1255 669 TIGRFAM PPR: pentatricopeptide repeat domain 451 484 IPR002885 -
Gso3g1255 669 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Gso3g1255 669 TIGRFAM PPR: pentatricopeptide repeat domain 349 381 IPR002885 -
Gso3g1255 669 Gene3D Tetratricopeptide repeat domain 271 399 IPR011990 GO:0005515
Gso3g1255 669 Gene3D Tetratricopeptide repeat domain 165 270 IPR011990 GO:0005515
Gso3g1255 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 50 216 - -
Gso3g1255 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 95 265 - -
Gso3g1255 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 195 326 - -
Gso3g1255 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 303 663 - -
Gso3g1255 669 Gene3D Tetratricopeptide repeat domain 422 649 IPR011990 GO:0005515
Gso3g1255 669 Gene3D Tetratricopeptide repeat domain 34 164 IPR011990 GO:0005515
Gso3g1255 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 346 IPR002885 -
Gso3g1255 669 MobiDBLite consensus disorder prediction 1 38 - -
Gso3g1255 669 Pfam E motif 566 628 IPR046848 -
Gso3g1255 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Gso3g1255 669 Pfam PPR repeat family 346 393 IPR002885 -
Gso3g1255 669 Pfam PPR repeat family 215 261 IPR002885 -
Gso3g1255 669 Pfam PPR repeat family 449 496 IPR002885 -
Gso3g1255 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Gso3g1255 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 448 IPR002885 -
Gso3g1255 669 Pfam PPR repeat 524 547 IPR002885 -
Gso3g1255 669 Pfam PPR repeat 189 213 IPR002885 -
Gso3g1255 669 Pfam PPR repeat 289 316 IPR002885 -
Gso3g1255 669 Pfam PPR repeat 116 143 IPR002885 -
Gso3g1255 669 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 95 265 - -
Gso3g1255 669 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 303 663 - -
Gso3g1255 669 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 195 326 - -
Gso3g1255 669 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 50 216 - -
Gso3g1255 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1255 Gso-Chr3 38236714 38239859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1255 71 665 Glycoside Hydrolase AT3G49170 33.223 3.00e-99 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1255 - - gmx:100790541 1353.58