Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1176 ATGCTAAGGACAACATCAATTCTTCCCACAACGTGGATTCCTCCTTCGCGTGAACCACATCGCAATCTATCTAACGTGTGCTTAACCTTTTACCATCACCATCATCATAAGTCCCTAGTGGTGAAGTGTTCGAAAATGACTGTCACACCTAAGATCTCAGTTAACGATGGGAAACTTGTTGTCCATGGTAAGACCATTCTGACTGGAGTGCCAGACAACGTTGTGCTGACTCCAGGTTCTGGAAGGGGTCTTGTGACTGGTGCTTTTGTTGGTGCCACAGCTTCACACAGCAAAAGTCTCCATGTGTTTCCAATGGGTGTTTTAGAGGGGCTCCGGTTCATGTGTTGTTTCCGGTTCAAGTTATGGTGGATGACTCAGAGAATGGGAACTTGTGGGAGGGATGTTCCTCTGGAGACTCAATTCATGCTTATTGAGAGCAAAGAGAGTGAAACTGATGGGGAGAATTCTCCAATCATCTACACTGTCTTGCTTCCTCTCCTCGAAGGTCAATTCCGAGCTGTTCTTCAAGGCAATGACAAGAACGAGATAGAGATTTGCCTCGAGAGTGGGGATAATGCAGTTGAGACTGACCAAGGCCTTCACATGGTTTACATGCATGCTGGGACCAATCCCTTTGAAGTCATCAATCAAGCTGTCAAGGCTGTGGAAAAACACATGCAAACTTTTCTTCATCGTGAGAAGAAAAGGTTGCCATCTTGTCTTGACTGGTTTGGATGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCTGAGGGTGTTGAGGAAGGCCTGAAAAGTCTATCACAGGGAGGTACACCTCCACGATTCCTCATCATAGATGATGGTTGGCAACAGATTGAAAATAAAGCAAAGGATGCTACTGAATGTTTGGTACAAGAAGGAGCACAGTTTGCTACTAGGTTGACTGGTATTAAAGAGAATACTAAATTTCAAAAGAAATTACAGAACAATGAGCAGATGTCAGGTCTGAAGCATCTAGTACATGGAGCAAAGCAGCATCACAATGTGAAAAATGTATATGTATGGCATGCACTAGCTGGTTATTGGGGTGGAGTGAAGCCAGCAGCAACCGGCATGGAACATTATGACACTGCCTTGGCATATCCAGTGCAGTCACCAGGCGTGCTAGGAAACCAACCAGACATTGTCATGGACAGCTTGGCTGTACATGGCCTTGGCCTAGTGCACCCAAAGAAGGTTTTCAATTTCTACAACGAGCTCCATGCTTACTTAGCTTCTTGTGGAGTAGATGGAGTGAAGGTTGATGTGCAGAACATTATTGAGACCCTTGGTGCGGGACATGGTGGCCGAGTGTCACTTACTCGCAGCTATCATCACGCGCTTGAGGCTTCCATTGCTAGCAATTTTACTGATAACGGATGCATTGCGTGTATGTGTCACAACACTGATGGACTTTATAGTGCTAAGCAGACTGCTATTGTGAGAGCTTCTGATGATTTTTACCCTCGTGATCCTGCTTCCCATACCATCCATATTTCTTCTGTTGCATACAACTCACTATTCCTTGGAGAATTCATGCAACCTGACTGGGACATGTTTCATAGTTTACACCCAGCAGCAGATTATCATGCTGCAGCTCGTGCAATTGGTGGATGTCCTATTTATGTTAGTGACAAGCCAGGCAATCACAATTTTGATCTTCTTAAGAAGCTGGTTCTCCCGGATGGTTCGGTTCTCCGTGCTCAGTTACCTGGCAGGCCAACTCGTGATTCTCTATTTGTGGATCCAGCCAGAGATAGGACTAGCTTGCTCAAAATATGGAACCTGAACAAATGCTCTGGAGTTGTTGGTGTATTTAACTGCCAAGGTGCTGGATGGTGCAAGATAGAGAAGAAAACCCGCATCCATGATACATCTCCTGGTACACTCACCGCCTCTGTCTGCGCCTCTGATGTTGACCTCATCACACAAGTAGCAGGAGCTGAATGGCTTGGAGATACAATTGTTTATGCTTACAGATCAGGTGAGGTGATTCGGCTACCAAAAGGGGTTTCAATTCCAGTGACACTAAAAGTTCTGGAGTTTGAGCTTTTCCACTTCTGTCCAATCCAAGAAATAGCTCCAAGTATATCATTTGCAGCAATAGGGCTACTGGATATGTTCAACACTGGAGGAGCAGTGGAGCAGGTTGAGATTCATAACCGAGCAGCAACGAAAACAATAGCTCTTAGTGTAAGGGGAAGAGGCAGATTTGGAGTTTACTCCTCCCAGAGACCACTGAAGTGTGTGGTAGGTGGCGCTGAAACCGACTTCAACTATGACTCAGAGACCGGGTTGACAACCTTCTCCATTCCAGTTTCTCCAGAGGAGATGTACAGATGGTCAATAGAGATCCAAGTTTGA 2388 0.4556 MLRTTSILPTTWIPPSREPHRNLSNVCLTFYHHHHHKSLVVKCSKMTVTPKISVNDGKLVVHGKTILTGVPDNVVLTPGSGRGLVTGAFVGATASHSKSLHVFPMGVLEGLRFMCCFRFKLWWMTQRMGTCGRDVPLETQFMLIESKESETDGENSPIIYTVLLPLLEGQFRAVLQGNDKNEIEICLESGDNAVETDQGLHMVYMHAGTNPFEVINQAVKAVEKHMQTFLHREKKRLPSCLDWFGWCTWDAFYTDVTAEGVEEGLKSLSQGGTPPRFLIIDDGWQQIENKAKDATECLVQEGAQFATRLTGIKENTKFQKKLQNNEQMSGLKHLVHGAKQHHNVKNVYVWHALAGYWGGVKPAATGMEHYDTALAYPVQSPGVLGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHHALEASIASNFTDNGCIACMCHNTDGLYSAKQTAIVRASDDFYPRDPASHTIHISSVAYNSLFLGEFMQPDWDMFHSLHPAADYHAAARAIGGCPIYVSDKPGNHNFDLLKKLVLPDGSVLRAQLPGRPTRDSLFVDPARDRTSLLKIWNLNKCSGVVGVFNCQGAGWCKIEKKTRIHDTSPGTLTASVCASDVDLITQVAGAEWLGDTIVYAYRSGEVIRLPKGVSIPVTLKVLEFELFHFCPIQEIAPSISFAAIGLLDMFNTGGAVEQVEIHNRAATKTIALSVRGRGRFGVYSSQRPLKCVVGGAETDFNYDSETGLTTFSIPVSPEEMYRWSIEIQV* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1176 795 Pfam Raffinose synthase or seed imbibition protein Sip1 52 778 IPR008811 -
Gso3g1176 795 Gene3D Aldolase class I 242 566 IPR013785 -
Gso3g1176 795 PANTHER - 46 795 IPR008811 -
Gso3g1176 795 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 2-RELATED 46 795 - -
Gso3g1176 795 SUPERFAMILY (Trans)glycosidases 241 571 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1176 Gso-Chr3 37291291 37297019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1176 46 594 Glycoside Hydrolase AT3G57520 83.273 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1176 K06617 - gmx:100807861 1639.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1176 3 37291291 37297019 Gso3g1176 3 37291291 37297019 ECH