Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1162 ATGGCCAGCACCGCAAATCACTGTCTCCAACTCGCCGGCGCCACCGAGTCAACTCGTCGCTGGAGAATCTCCATTTCGTGCAAGAAGAAGTCGGACAAGTTAGCATTCAAGGAAACGAAGGAAGGCTTCGTGGACTACGACAGAGGCCAGCACGAGGTCTCCACGAAAATATCCGGCCTCCGCAAGGACGACATCGCCGCCCGATATCGCCTCCGCGTCGCCGGAAACCGCTTCCAGATGGACTGGACGGTGTCGGAGGTCGCCGAACTTGTCCTCTCCCTCAACCTCTCCGACGACGACGACGTCGACGGCCTGCTCAACCGCTGGGTTGGCCGCTTCGCGCGCAAGAATTTCCCCTTCCTTATCAAGGAGTTGACGCAGCGAGGGTCCATTGAACACTGTAACCGCGTGTTCCGGTGGTTGAAGAACCAGAAGAACTACCGTGCGCGCAATGATATATACAATATGATGATTAGGTTGCACGCCAGGCACAATCGAACGGACCAGGCGCGTGGATTGTTTTTTGAGATGCAGGAATGGAGGTGTAAACCTGATGTCGAGACTTACAATGCTATTATTAATGCGCATGGTCGGGCTGGACAGTGGCGTTGGGCTATGAATATCATGGATGACATGCTGCGTGCAGCTATTCCACCAAGTCGGTCAACTTATAACAACTTAATAAACGCTTGTGGATCTAGTGGGAATTGGAAAGAAGCACTTAATGTTTGCAAGAAAATGACAGAGAATGGTGTTGGGCCTGATCTTGTTACTCACAATATTATTCTATCTGCATTTAAAAGTGGGGCTCAGTATTCAAAAGCTTTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGACACAACTACACTTAATATTGTTATCCATTGTCTAGTAAAACTTAGGCAATATGACAAAGCTATTGAAATTTTTAATTCCATGAGGGAGAAGAAGTCGGAATGTACCCCTGATGTTGTTACATTCACTAGTATCATTCACCTGTATTCTGTGTGTGGGCAAGTTGAAAATTGTGAGGCTGCATTTAATATGATGATTGCAGAAGGGCTGAAACCTAATATAGTCTCATATAATGCACTCATAGGTGCATATGCTGCTCGTGGTATGGACAATGAGGCGCATTTGTTTTTCAATGAGATAAAACAAAATGGCTTCCGCCCTGATATTGTATCGTATACATCTCTCCTTAATGCTTATGGAAGGTCACAAAAGCCCCATAAAGCTAGACAAATATTTGATAGGATGAAGAGAAACAAGTTGAAGCCAAATCTTGTCAGTTACAATGCGCTGATTGATGCCTATGGATCTAATGGTTTGCTGGCAGATGCAATTAAAATCTTGCGAGAAATGGAACAAGAAGGAATTCAGCCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCGAAAGGTGAAGATTGACACAGTGCTAACAGCAGCTGAGATGCGAGGAATTAAATTAAACACAGTTGCATATAATGCAGCTATAGGAAGCTGTATGAATGTAGGGGAATATGACAAAGCTATAGGCTTGTATAAATCTATGAGGAAGAAAAAAATTAAAACTGATTCTGTTACTTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATACGGCGAAGCCCTATCTTTTATGGAAGAAATTATGCATCTAAAACTTCCTTTGTCCAAAGAGGTCTACTCATCCGCCATATGCGCCTATAGCAAACAGGGCCAAATTGTAGAGGCAGAGTCTACATTCAACTTGATGAAATCATCTGGTTGCTACCCTGATGTGGTTACATACACCGCCATGCTTGATGCGTACAATGCAGCTGAGAATTGGGAGAAAGCTTATGCACTCTTTGAAGAAATGGAAGCAAGCAGCATCAAGCTAGATACTATTGCCTGTGCAGCTCTAATGAGATCTTTTAATAAAGGTGGCCAACCAGGAAGGGTTCTTAGTCTTGCAGAAAGTATGAGAGAAAAAGAAATTCCTTTCAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCATATTACAAGATTGGAGGACAGCTGTTGATATGATCAAGTACATAGAGCCCTCACTTCCTGTAATTTCATCCGGATGTTTGAATCAGTTCCTGCATTCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTGGCATCAGGTGCCGATGTTAACTTAAACACTTACTCTATATTATTGAAGAACCTTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGGTATTGCAATGGATGGAGGATGCCGGAATTCATCCATCAAAAGAAATGTACCATGATATATCCTCCTTTTCACAAAAATGCTGTGGCAATGAAAATGCTGCTGTCATAAGAGAAAGACTTGAATCCTTGAAAAGAGAATTCGGGGATCAAATTTCTACAAGCCAGCCCTGTGAATCTCTTGTCATGGAATCACATTCTTTTGCTTAG 2514 0.426 MASTANHCLQLAGATESTRRWRISISCKKKSDKLAFKETKEGFVDYDRGQHEVSTKISGLRKDDIAARYRLRVAGNRFQMDWTVSEVAELVLSLNLSDDDDVDGLLNRWVGRFARKNFPFLIKELTQRGSIEHCNRVFRWLKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACSILQDWRTAVDMIKYIEPSLPVISSGCLNQFLHSLGKSGKIETMLKLFFKMLASGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSKEMYHDISSFSQKCCGNENAAVIRERLESLKREFGDQISTSQPCESLVMESHSFA* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Gso3g1162 837 PANTHER OS07G0213300 PROTEIN 23 790 - -
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Gso3g1162 837 Pfam Pentatricopeptide repeat domain 325 374 IPR002885 -
Gso3g1162 837 Pfam Pentatricopeptide repeat domain 735 784 IPR002885 -
Gso3g1162 837 Pfam Pentatricopeptide repeat domain 386 446 IPR002885 -
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Gso3g1162 837 Pfam PPR repeat 257 283 IPR002885 -
Gso3g1162 837 Pfam PPR repeat 153 182 IPR002885 -
Gso3g1162 837 Pfam PPR repeat 293 320 IPR002885 -
Gso3g1162 837 Pfam PPR repeat family 575 618 IPR002885 -
Gso3g1162 837 Pfam PPR repeat family 184 231 IPR002885 -
Gso3g1162 837 Pfam PPR repeat family 502 550 IPR002885 -
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Gso3g1162 837 Gene3D Tetratricopeptide repeat domain 321 387 IPR011990 GO:0005515
Gso3g1162 837 Gene3D Tetratricopeptide repeat domain 462 565 IPR011990 GO:0005515
Gso3g1162 837 Gene3D Tetratricopeptide repeat domain 566 639 IPR011990 GO:0005515
Gso3g1162 837 Gene3D Tetratricopeptide repeat domain 388 461 IPR011990 GO:0005515
Gso3g1162 837 Gene3D Tetratricopeptide repeat domain 86 247 IPR011990 GO:0005515
Gso3g1162 837 Gene3D Tetratricopeptide repeat domain 248 320 IPR011990 GO:0005515
Gso3g1162 837 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 23 790 - -
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 747 781 IPR002885 -
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Gso3g1162 837 Gene3D Tetratricopeptide repeat domain 655 834 IPR011990 GO:0005515
Gso3g1162 837 SUPERFAMILY TPR-like 186 356 IPR011990 GO:0005515
Gso3g1162 837 SUPERFAMILY TPR-like 290 663 IPR011990 GO:0005515
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 434 468 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 364 398 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 575 608 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 539 568 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 609 643 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 188 220 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 257 291 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 223 255 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 504 537 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 293 324 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 329 363 IPR002885 -
Gso3g1162 837 TIGRFAM PPR: pentatricopeptide repeat domain 153 186 IPR002885 -
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Gso3g1162 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1162 235 795 Glycosyltransferase AT1G05670 23.843 7.70e-39 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1162 - - gmx:100814643 1668.29