Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1139 ATGGTGTCATCAAAACCTAGTGGCTTCTATGAACAAAGGAGCTTTCCATCAATCAAAATCCTCATACTTATACTCCTTAATTCTATACTTCACAAAGCCAACTCAGGCTGCAGCAACTCTGTTTCCAACTCCTTAGTTCCATTTCTATCTCATGAGATACTCTCATCATTGCAAACACTACCTCTAGATGGCCACTTTAGCCTAAGGGACAATGAGGATGCTGCCAAGGACTTTGGCAACATACACCATTTTCCTCCCCTAGCAGTGCTGTATCCAAAAACAGTTTCTGACATATCACTCACCATCAAGCATGTTTTTGAAATGGGGTTTGCCGCACAGCTGAAGATTGCTGCTAGAGGCCATGGCCATTCACTTCAAGGCCAAGCACAAGTACATGGAGGCCTAGTCATTAACATGGAGTCTTTACAGGGTCCTGAAATGAAAGTTCACAATGGAGAATTGCCTTATGTGGATGTCTCAGGAGGTGAGTTGTGGATAAACATTCTGCATGAGACTCTTAAACTTGGGTTGGCACCAAAGTCATGGACAGATTACCTTCACCTCACTGTTGGGGGTACTCTTTCAAATGCTGGCATAAGTGGGCAAGCCTTCAAACATGGACCTCAGATCAATAACATCTTTCAGCTTGAAGTGATCACAGGAAAAGGAGAGGTGGTTACCTGCTCAGGGAACCGAAACGCTGACCTTTTTTATGGTGTTCTTGGAGGGCTTGGTCAATTTGGCATCATTACAAGGGCTAGAATTTCTCTTGAACCAGCACCTAAGATGGTTAAATGGATTAGGGTGCTCTACTCAGAGTTCTCTACATTTACTAGGGATCAAGAGTATTTGGTATCACTTAACAACACATTTGATTATATTGAAGGGTTTGTGATCATAAACAGAACTGGCATCCTTAACAATTGGAGATCATCCTTTGATCCCAAAAACCAACTTCAAGCCAGCCAATTCAGTTCTGATGGGAAAACCTTCTACTGTCTAGAGATGGCAAAATATTTCAACCCTGGTGAAGCTGAAGCCATGAATCAGAGTGTAGCTTACCTACTGTCAAAGTTGAGTTACATTCCATCCACACTCTTCCTATCAGAAGTTTCTTACGTGGAATTCTTAGACAGAGTGCATGTTTCTGAGAAAAAGCTAAGAGCACAAGGCTTGTGGGAAGTTCCCCATCCTTGGCTGAACCTTCTGATCCCAAGGAGTGAGATTCATAACTTTGCTGAAGAAGTATTTGGCAATATTCTTAAAGACACAAACAATGGACCCATACTCATTTACCCCGTCAACCAAACACGGTGGAACAGCAAAACATCATTGATTACCCCAGAGGAAGATATTTTTTACCTAGTAGCATTCCTATCCTTAGCTCTCCCAAATTCTACCGGTGCAGACAGTTTAGAACACATTCTAGCCCAAAACAAAAGAGTCATAGATTTCTACACTGGTGCCAAAATGAGAGTGAAGCAATACCTTCCCCATTACAGCACACAGGAAGAATGGCAAGTCCATTTTGGGTCACGATGGGAGACATTCGTGGAAAGAAAAAGGGCCTATGACCCACTAGCACTGCTAGCCCCTGGCCACAAAATCTTTCAAAAGGCTGTCTCCTCTTCGTGTTAG 1638 0.4286 MVSSKPSGFYEQRSFPSIKILILILLNSILHKANSGCSNSVSNSLVPFLSHEILSSLQTLPLDGHFSLRDNEDAAKDFGNIHHFPPLAVLYPKTVSDISLTIKHVFEMGFAAQLKIAARGHGHSLQGQAQVHGGLVINMESLQGPEMKVHNGELPYVDVSGGELWINILHETLKLGLAPKSWTDYLHLTVGGTLSNAGISGQAFKHGPQINNIFQLEVITGKGEVVTCSGNRNADLFYGVLGGLGQFGIITRARISLEPAPKMVKWIRVLYSEFSTFTRDQEYLVSLNNTFDYIEGFVIINRTGILNNWRSSFDPKNQLQASQFSSDGKTFYCLEMAKYFNPGEAEAMNQSVAYLLSKLSYIPSTLFLSEVSYVEFLDRVHVSEKKLRAQGLWEVPHPWLNLLIPRSEIHNFAEEVFGNILKDTNNGPILIYPVNQTRWNSKTSLITPEEDIFYLVAFLSLALPNSTGADSLEHILAQNKRVIDFYTGAKMRVKQYLPHYSTQEEWQVHFGSRWETFVERKRAYDPLALLAPGHKIFQKAVSSSC* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1139 545 PANTHER CYTOKININ OXIDASE/DEHYDROGENASE-LIKE PROTEIN 10 542 - -
Gso3g1139 545 Gene3D - 71 537 IPR016167 -
Gso3g1139 545 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 261 537 IPR015345 GO:0009690|GO:0019139|GO:0050660
Gso3g1139 545 Pfam FAD binding domain 86 229 IPR006094 GO:0050660
Gso3g1139 545 PANTHER GULONOLACTONE OXIDASE 10 542 - -
Gso3g1139 545 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 86 121 IPR006093 GO:0016491
Gso3g1139 545 SUPERFAMILY FAD-linked oxidases, C-terminal domain 261 537 IPR016164 GO:0003824|GO:0050660
Gso3g1139 545 Gene3D - 263 496 IPR016170 -
Gso3g1139 545 ProSiteProfiles PCMH-type FAD-binding domain profile. 82 260 IPR016166 GO:0071949
Gso3g1139 545 Gene3D - 139 262 IPR016169 -
Gso3g1139 545 SUPERFAMILY FAD-binding/transporter-associated domain-like 69 259 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1139 Gso-Chr3 36768360 36771522 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1139 K00279 - gmx:100808738 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1133 19 39521623 39524803 Gso3g1139 3 36768360 36771522 GST